View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_low_79 (Length: 326)
Name: NF14349_low_79
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_79 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 5310967 - 5310655
Alignment:
| Q |
1 |
agcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310967 |
agcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
5310868 |
T |
|
| Q |
101 |
gctccttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcag |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5310867 |
gctccttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaataagagcag |
5310768 |
T |
|
| Q |
201 |
cagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaa |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310767 |
cagctccatctccaaacaatgcttgcccaacaaggctgtccaagtgagtatcactggggccacgaaatgtgacagcggtgacttcagaacaaacaaccaa |
5310668 |
T |
|
| Q |
301 |
cacacgagcacct |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5310667 |
cacacgagcacct |
5310655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 5289249 - 5289561
Alignment:
| Q |
1 |
agcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5289249 |
agcctcaaccaatgctttagtgatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtggccatcaatg |
5289348 |
T |
|
| Q |
101 |
gctccttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcag |
200 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5289349 |
gctccttcactatccggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaataagagcag |
5289448 |
T |
|
| Q |
201 |
cagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289449 |
cagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaa |
5289548 |
T |
|
| Q |
301 |
cacacgagcacct |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5289549 |
cacacgagcacct |
5289561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 5315681 - 5315369
Alignment:
| Q |
1 |
agcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315681 |
agcctcaaccaatgctttagtaatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
5315582 |
T |
|
| Q |
101 |
gctccttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcag |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
5315581 |
gctccttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctctatttctggtactgggtcagagccaacaataagagcag |
5315482 |
T |
|
| Q |
201 |
cagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaa |
300 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315481 |
ccgctccatctccaaatagtgcttgtccaacaaggctgtctaagtgagtatcactaggaccacgaaatgtgacagcggtgacttcagaacaaacaaccaa |
5315382 |
T |
|
| Q |
301 |
cacacgagcacct |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5315381 |
cacacgagcacct |
5315369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 5284878 - 5284566
Alignment:
| Q |
1 |
agcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284878 |
agcctcaaccaatgctttagtaatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
5284779 |
T |
|
| Q |
101 |
gctccttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcag |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||| |
|
|
| T |
5284778 |
gctccttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtctctcaatttctggtattgggtcagagccaacaataagagcag |
5284679 |
T |
|
| Q |
201 |
cagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaa |
300 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284678 |
cagctccatctccaaatagtgcttgtccaacaagactgtctaagtgagtatcgctagggccacgaaatgtgacagcggtgacttcagaacaaacaaccaa |
5284579 |
T |
|
| Q |
301 |
cacacgagcacct |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5284578 |
cacacgagcacct |
5284566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 5 - 313
Target Start/End: Complemental strand, 5303062 - 5302754
Alignment:
| Q |
5 |
tcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5303062 |
tcaaccaatgctttagtaatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctc |
5302963 |
T |
|
| Q |
105 |
cttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcagcagc |
204 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
5302962 |
cttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtacggggtcagagccaacaataagagcagcagc |
5302863 |
T |
|
| Q |
205 |
tccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaacaca |
304 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
5302862 |
tccatctccaaatagtgcttgtccaacaagactgtccaagtgagtatcactagggccacgaaatgtgacagcggtgacctctgaacatacaaccaacaca |
5302763 |
T |
|
| Q |
305 |
cgagcacct |
313 |
Q |
| |
|
||||||||| |
|
|
| T |
5302762 |
cgagcacct |
5302754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 46706540 - 46706852
Alignment:
| Q |
1 |
agcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
100 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46706540 |
agcctcaactaatgctttatcaatgttctttgaaacaatcccaggaacatcttttagaaggtggaatgttagtccagcttcacgaaggtgaccatcaatg |
46706639 |
T |
|
| Q |
101 |
gctccttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcag |
200 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| |
|
|
| T |
46706640 |
gctccttcactatctggagcaattgtttgtgaagtccaaaccatctcaaatataggtttctcaatttctggtactggatcagaaccaacaataagtgcag |
46706739 |
T |
|
| Q |
201 |
cagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaa |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
46706740 |
cagctctgactccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactagggccgcggaatgtgactgcagtgacttcagaacaaacaaccaa |
46706839 |
T |
|
| Q |
301 |
cacacgagcacct |
313 |
Q |
| |
|
||||| |||||| |
|
|
| T |
46706840 |
tacacgggcacct |
46706852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 44133349 - 44133037
Alignment:
| Q |
1 |
agcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
100 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44133349 |
agcctcaaccaatgctttattgatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
44133250 |
T |
|
| Q |
101 |
gctccttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcag |
200 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| || |||| |
|
|
| T |
44133249 |
gctccttcactatctggagcaattgtttgtgcagtccaaaccatctcaaatattggtttctcaatttctggtactggatctgaaccaacaattagtgcag |
44133150 |
T |
|
| Q |
201 |
cagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaa |
300 |
Q |
| |
|
|||||||||||||||| || || || ||||||||||||||||||||||||||||| ||||| || |||||||| || |||||||||||||| |||||||| |
|
|
| T |
44133149 |
cagctccatctccaaatagggcctgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcagaacagacaaccaa |
44133050 |
T |
|
| Q |
301 |
cacacgagcacct |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44133049 |
cacacgagcacct |
44133037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 44141771 - 44141459
Alignment:
| Q |
1 |
agcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
100 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44141771 |
agcctcaaccaatgctttattgatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccgtcaatg |
44141672 |
T |
|
| Q |
101 |
gctccttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcag |
200 |
Q |
| |
|
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| || |||| |
|
|
| T |
44141671 |
gccccttcactatctggagcaattgtttgtgcagtccaaaccatctcaaatattggtttctcaatttctggtactggatctgaaccaacaattagtgcag |
44141572 |
T |
|
| Q |
201 |
cagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaa |
300 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| || |||||||| || |||||||||||||| |||||||| |
|
|
| T |
44141571 |
cagctccatctccaaatagtgcttgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcagaacagacaaccaa |
44141472 |
T |
|
| Q |
301 |
cacacgagcacct |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44141471 |
cacacgagcacct |
44141459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 44129144 - 44128832
Alignment:
| Q |
1 |
agcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
100 |
Q |
| |
|
|||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44129144 |
agcctcaaccaaagctttattgatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
44129045 |
T |
|
| Q |
101 |
gctccttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcag |
200 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| || |||| |
|
|
| T |
44129044 |
gctccttcactatctggagcaattgtttgtgcagtccaaaccatctcaaatattggtttctcaatttctggtactggatctgaaccaacaattagtgcag |
44128945 |
T |
|
| Q |
201 |
cagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaa |
300 |
Q |
| |
|
|||||||||||||||| || || || ||||||||||||||||||||||||||||| ||||| || |||||||| || |||||||||||||| |||||||| |
|
|
| T |
44128944 |
cagctccatctccaaatagggcctgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcagaacagacaaccaa |
44128845 |
T |
|
| Q |
301 |
cacacgagcacct |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44128844 |
cacacgagcacct |
44128832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 1478569 - 1478257
Alignment:
| Q |
1 |
agcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
100 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1478569 |
agcctcgaccaatgctttatcaatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagaccagcttcacgaaggtgaccatcaatg |
1478470 |
T |
|
| Q |
101 |
gctccttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcag |
200 |
Q |
| |
|
||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| |
|
|
| T |
1478469 |
gctccctcactgtctggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtattgggtcagaaccaacaatgagtgcag |
1478370 |
T |
|
| Q |
201 |
cagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaa |
300 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || || || |||||||||||||||||||| |
|
|
| T |
1478369 |
cagcaccatctccaaatagtgcttgtccaacaagactgtccaaatgagtatcactaggaccacggaatgtcactgcagtaacttcagaacaaacaaccaa |
1478270 |
T |
|
| Q |
301 |
cacacgagcacct |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1478269 |
cacacgagcacct |
1478257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 1482754 - 1482451
Alignment:
| Q |
10 |
caatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttca |
109 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| || ||| |
|
|
| T |
1482754 |
caatgctttatcaatgttctttgaaacaatcccaggaacatctttaagaaggtgaaatgttagaccagcttcacgaagatgaccgtcaatggccccctca |
1482655 |
T |
|
| Q |
110 |
ctatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccat |
209 |
Q |
| |
|
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
1482654 |
ctgtctggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtattgggtcagaaccaacaatgagtgcagcagctccat |
1482555 |
T |
|
| Q |
210 |
ctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagc |
309 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || || || ||||||||||||||||||||||||||||| |
|
|
| T |
1482554 |
ctccaaagagtgcttgtccaacaagactgtccaaatgagtatcactaggaccacggaatgtcactgcagtaacttcagaacaaacaaccaacacacgagc |
1482455 |
T |
|
| Q |
310 |
acct |
313 |
Q |
| |
|
|||| |
|
|
| T |
1482454 |
acct |
1482451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 5 - 313
Target Start/End: Complemental strand, 1505543 - 1505235
Alignment:
| Q |
5 |
tcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctc |
104 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1505543 |
tcaaccaatgctttattgatgttctttgaaacaatttcaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccgtcaatggctc |
1505444 |
T |
|
| Q |
105 |
cttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcagcagc |
204 |
Q |
| |
|
|||| |||||||| || || |||||||||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||||||| || |||||||| |
|
|
| T |
1505443 |
cttcgctatcaggcgcgattgtttgtgcagtccaaaccatttcaaatataggtttctcaatttctggtattggatctgaaccaacaattagtgcagcagc |
1505344 |
T |
|
| Q |
205 |
tccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaacaca |
304 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| || |||||||| || |||||||| ||||| |||||||||||| |
|
|
| T |
1505343 |
tccatctccaaatagagcttgtccaacaaggctgtccaagtgagtatcactagggccgcgaaatgtgactgcagtgacttcggaacagacaaccaacaca |
1505244 |
T |
|
| Q |
305 |
cgagcacct |
313 |
Q |
| |
|
|| |||||| |
|
|
| T |
1505243 |
cgggcacct |
1505235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 1492738 - 1492426
Alignment:
| Q |
1 |
agcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatg |
100 |
Q |
| |
|
||||||||| ||||||||| | || || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
1492738 |
agcctcaactaatgctttatttatattttttgacacaatcccaggaacatctttaagaaggtgaaatgttaacccagcttcacgaagatgaccatcaatg |
1492639 |
T |
|
| Q |
101 |
gctccttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcag |
200 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||||||||||| || ||||| |||||||| || |||| |
|
|
| T |
1492638 |
gcaccttcactatcaggagcaattgtttgtgctgtccaaatcatctcaaatataggtttttcaatttctggtaccggatcagacccaacaataagtgcag |
1492539 |
T |
|
| Q |
201 |
cagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaa |
300 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||| || |||||||||||||||||||| || |
|
|
| T |
1492538 |
ctgctccatctccaaatagtgcttgtccaacaagactgtccaagtgtgtatcactgggaccacgaaatgtgactgcagtgacttcagaacaaacaactaa |
1492439 |
T |
|
| Q |
301 |
cacacgagcacct |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1492438 |
cacacgagcacct |
1492426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 29 - 310
Target Start/End: Complemental strand, 1509666 - 1509385
Alignment:
| Q |
29 |
tttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagcaatggttt |
128 |
Q |
| |
|
||||||||| || ||| |||||||||||||| |||||||||||||| |||||||||||||||| |||||||| |||||||||| |||||||| |||| |
|
|
| T |
1509666 |
tttgagacagtcacagagacatctttaagaagacgaaatgttagtccaacttcacgaaggtgaccgtcaatggcaccttcactatttggagcaattgttt |
1509567 |
T |
|
| Q |
129 |
gtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgccc |
228 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| || |||||||||||||||||||| | |||||| || |
|
|
| T |
1509566 |
gtgcagtccaaaccatctcaaatatagatttctcaatttctggtacagggtcagtaccaacaatgagtgcagcagctccatctccaaataatgcttgtcc |
1509467 |
T |
|
| Q |
229 |
aacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagca |
310 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||| |||||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
1509466 |
aacaagactgtccaaatgagtatcaccagggccacaaaatgtgactgcaatgactttagaacaaacaaccaacacacgagca |
1509385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 26 - 313
Target Start/End: Complemental strand, 1499785 - 1499498
Alignment:
| Q |
26 |
ttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagcaatgg |
125 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| ||| | | ||||||| ||| |||||||||| |||||| ||| |||||||||||||||| |||||| | |
|
|
| T |
1499785 |
ttctttgagacaatctcagagacatccttacgaatattatatgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattg |
1499686 |
T |
|
| Q |
126 |
tttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttg |
225 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||||||||||||| |||||| ||||||| |||||||| | || ||||||||||||||||| | |||||| |
|
|
| T |
1499685 |
tttgtgcagtccaaactaactcaaataaaggtttctcaatttcaggtactaggtcagagccaacaatgactgccgcagctccatctccaaatattgcttg |
1499586 |
T |
|
| Q |
226 |
cccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacct |
313 |
Q |
| |
|
|||||||| ||| | |||||||| ||| || |||| |||| || || |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1499585 |
tccaacaagtttgtgtaggtgagtattactaggtccacaaaatgagattgcagtgatttcagaacaaacaaccaacacacgagcacct |
1499498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 1487218 - 1487006
Alignment:
| Q |
23 |
atgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagcaa |
122 |
Q |
| |
|
||||||||||||| ||| |||| ||||||||| |||| | ||||||||||||| |||||||||| || || ||| ||| |||||||||| |||| | |
|
|
| T |
1487218 |
atgttctttgagataatttcagggacatctttacgaagattaaatgttagtccaacttcacgaagttggccgctaattgcttcttcactatctagagcta |
1487119 |
T |
|
| Q |
123 |
tggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgc |
222 |
Q |
| |
|
| ||||||||||||||||| | |||||| | |||||||||||||| || || || || || |||||||| | || |||||||||| ||||| | ||| |
|
|
| T |
1487118 |
ttgtttgtgcagtccaaacaagctcaaagagaggtttctcaatttttgatatcggatcggagccaacaatgactacaacagctccatcaccaaataatgc |
1487019 |
T |
|
| Q |
223 |
ttgcccaacaagg |
235 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
1487018 |
ttgtccaacaagg |
1487006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 2 - 313
Target Start/End: Original strand, 24163343 - 24163654
Alignment:
| Q |
2 |
gcctcaaccaatgctttagtaatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatgg |
101 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||||| | |||||||| ||| ||| ||||||| ||| ||| ||||||||| || ||| ||| | |
|
|
| T |
24163343 |
gcctcaaacaatgctttatcaatattctttgagacaatgtctggaacatccttacaaagatgaaatgatagcccaaattcacgaagttggccacaaatag |
24163442 |
T |
|
| Q |
102 |
ctccttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcagc |
201 |
Q |
| |
|
|||||||||||| ||||| || |||||||| |||||||| | |||||||| ||||||||||||||| ||| ||||||||| |||||||| | ||||| |
|
|
| T |
24163443 |
ctccttcactatttggagcgattgtttgtgctgtccaaactaactcaaatagaggtttctcaatttcctgtattgggtcagagccaacaatgactgcagc |
24163542 |
T |
|
| Q |
202 |
agctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaac |
301 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||| |||| ||||||||||| || || |||| ||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
24163543 |
agctccatctccaaatagagcttgtccaacaaggttgtctaagtgagtatcgcttggtccacaaaatgtgattgcggtaacttcagaacaaacaaccaac |
24163642 |
T |
|
| Q |
302 |
acacgagcacct |
313 |
Q |
| |
|
||||||| |||| |
|
|
| T |
24163643 |
acacgagaacct |
24163654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 309
Target Start/End: Original strand, 37862963 - 37863250
Alignment:
| Q |
22 |
aatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagca |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || || || ||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||| | |
|
|
| T |
37862963 |
aatgttctttgagacaaggccaggaacatccttgaggagatggaatgtcagtcctgcttctcgaaggtgaccatcaatagctccttcactatctggaacg |
37863062 |
T |
|
| Q |
122 |
atggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtg |
221 |
Q |
| |
|
|| ||||||||||||||||||| ||||| | ||| ||||||| |||||| | || || ||||||||||||| ||| || || ||||||||||||| || |
|
|
| T |
37863063 |
attgtttgtgcagtccaaaccaattcaaacaaaggcttctcaacttctggcaacggatctgaaccaacaatcacagctgctgcaccatctccaaacaatg |
37863162 |
T |
|
| Q |
222 |
cttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagc |
309 |
Q |
| |
|
| ||||| ||||| || || | ||||||||||| || |||||||| || || || |||| || |||||||| ||||| |||||||| |
|
|
| T |
37863163 |
cctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaactgcagtgatctccgaacaaaccaccaaaacacgagc |
37863250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 22 - 313
Target Start/End: Original strand, 37858937 - 37859228
Alignment:
| Q |
22 |
aatgttctttgagacaatcccaggaacatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagca |
121 |
Q |
| |
|
|||||||||||||| || ||||||||||| || || || || ||||| || || |||||||||||||||| ||||| |||||||||||||| ||| |
|
|
| T |
37858937 |
aatgttctttgagataagaccaggaacatccttgaggagatggaatgtaagcccgacttcacgaaggtgaccgtcaattgctccttcactatctggaagg |
37859036 |
T |
|
| Q |
122 |
atggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtg |
221 |
Q |
| |
|
|| |||||||||||||| |||| ||||| | |||||||||| || ||||| |||||| ||||| || |||| ||| || || ||||||||||||| || |
|
|
| T |
37859037 |
atcgtttgtgcagtccataccaattcaaacaagggtttctcaacttgtggtaatgggtctgaacctacgatcacagctgctgcaccatctccaaacaatg |
37859136 |
T |
|
| Q |
222 |
cttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacct |
313 |
Q |
| |
|
||||||| |||||||| || | ||||| |||||||| |||||||| || || || || | || |||||||| |||||||||||||||||| |
|
|
| T |
37859137 |
cttgccccacaaggctatcaagatgagtgtcactgggtccacggaaagtaactgcagttatctctgaacaaactaccaacacacgagcacct |
37859228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 39030541 - 39030424
Alignment:
| Q |
101 |
gctccttcactatcaggagcaatggtttgtgcagtccaaaccatctcaaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcag |
200 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| |||| ||||| | ||| ||||||| |||||| | ||||| ||||||||||||| ||| | |
|
|
| T |
39030541 |
gctccttcactatctggaatgatggtttgtgcagtccataccaattcaaacaaaggcttctcaacttctggcaacgggtctgaaccaacaatcacagctg |
39030442 |
T |
|
| Q |
201 |
cagctccatctccaaaca |
218 |
Q |
| |
|
| || ||||||||||||| |
|
|
| T |
39030441 |
ccgcaccatctccaaaca |
39030424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 203
Target Start/End: Complemental strand, 35251342 - 35251186
Alignment:
| Q |
47 |
acatctttaagaaggtgaaatgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagcaatggtttgtgcagtccaaaccatct |
146 |
Q |
| |
|
||||| || ||||| || |||||||||||| | |||||||||||||||||||| ||||||| |||||||||| || |||||||||||||| | | || |
|
|
| T |
35251342 |
acatccttgagaagatggaatgttagtccaacctcacgaaggtgaccatcaatagctccttgactatcaggaaggattgtttgtgcagtccactctagct |
35251243 |
T |
|
| Q |
147 |
caaatataggtttctcaatttctggtactgggtcagaaccaacaatcagagcagcag |
203 |
Q |
| |
|
|||| | |||| |||||| || |||| ||| || |||||||| |||| ||| |||| |
|
|
| T |
35251242 |
caaacaaaggtctctcaacctcaggtaatggatctgaaccaacgatcacagctgcag |
35251186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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