View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_8 (Length: 619)
Name: NF14349_low_8
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 602
Target Start/End: Original strand, 29663095 - 29663689
Alignment:
| Q |
8 |
agattatactaatactcctgaattgtattgcgggggctatcgcccatgcaccccatttgcccccaacaaatagttgggcctaacatacgtttgagtaaaa |
107 |
Q |
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| T |
29663095 |
agattatactaatactcctgaattgtattccgggggctatcgcctatgcaccccatttgcccccaacaaatagttgggcctaacatacgtttgagtaaaa |
29663194 |
T |
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| Q |
108 |
ttcaagggcaggggcggagggagcttcactagctcagcttccatatcccttcccctcttccgtgtctatatatgagtcatactcaacaagatagggagag |
207 |
Q |
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| T |
29663195 |
ttcaagggcaggggcggagggagcttcactagctcagcttccataccccttcccctcttccgtgtctatatatgagtcatactcaacaagatagggagag |
29663294 |
T |
|
| Q |
208 |
tggcaagagcaataacaaataactattcatacttgaatccgataattttataacgtgtgagtcatccacatcctatatatgtttgataatgatctaatac |
307 |
Q |
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| T |
29663295 |
tggcaagagcaacaacaaataactattcatacttgaatccgataattttataacgtgtgagtcatccacatcctatatatgtttgataatgatctaatac |
29663394 |
T |
|
| Q |
308 |
acctacatccactctaacttcttcaccaagccaaaccataccaatgcattgatactgcacattgtatgattaagtttttaattctttagttattaaataa |
407 |
Q |
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| T |
29663395 |
acctacatccactctaacttctccaccaagcgaaaccataccaatgcattgatactacacattgtatgattaagtttttaattctttagttattaaataa |
29663494 |
T |
|
| Q |
408 |
tgtctcacatttcctatattggtttgtggagcaattttggccacaaataagttgctagttgttcaactgttgactgtaaattgtgctgcatacattatcc |
507 |
Q |
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| T |
29663495 |
tgtctcacatttcctatattggtttgtggagcaattttggccacaaataagttgctagttgttcaactgttgactgtaaattgtgctgcatacattatcc |
29663594 |
T |
|
| Q |
508 |
aaacacagcagaaggtgttcagttgaatatgtggttgaagattgtactccaagcaagcgtcagttgttgccagcatcaaagctgacgccactatt |
602 |
Q |
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| T |
29663595 |
aaacacagcagaaggtgttcagtttaatatgtggttgaagattgtactccaagcaagcgtcagttgttgccagcatcaaagctgaagccactatt |
29663689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 34251245 - 34251287
Alignment:
| Q |
154 |
cccttcccctcttccgtgtctatatatgagtcatactcaacaa |
196 |
Q |
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| T |
34251245 |
cccttgccctcttttgtgtctatatatgagtcatactcaacaa |
34251287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 32155416 - 32155380
Alignment:
| Q |
160 |
ccctcttccgtgtctatatatgagtcatactcaacaa |
196 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
32155416 |
ccctcttttgtgtctatatatgagtcatactcaacaa |
32155380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 28915903 - 28915867
Alignment:
| Q |
159 |
cccctcttccgtgtctatatatgagtcatactcaaca |
195 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
28915903 |
cccctcttttgtgtctatatatgagtcatactcaaca |
28915867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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