View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_low_81 (Length: 323)

Name: NF14349_low_81
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_low_81
NF14349_low_81
[»] chr7 (3 HSPs)
chr7 (1-312)||(36732737-36733050)
chr7 (61-108)||(6205407-6205454)
chr7 (61-108)||(6792779-6792826)
[»] chr1 (12 HSPs)
chr1 (1-151)||(37752510-37752660)
chr1 (15-134)||(5321571-5321690)
chr1 (13-152)||(30901875-30902016)
chr1 (61-106)||(19552755-19552800)
chr1 (7-135)||(9886377-9886505)
chr1 (61-108)||(7797868-7797915)
chr1 (61-108)||(8055142-8055189)
chr1 (61-108)||(28705316-28705363)
chr1 (61-108)||(46019186-46019233)
chr1 (61-108)||(46077336-46077383)
chr1 (61-108)||(49572822-49572869)
chr1 (61-108)||(33695937-33695984)
[»] chr5 (1 HSPs)
chr5 (9-187)||(41550089-41550268)
[»] chr6 (2 HSPs)
chr6 (64-187)||(6262130-6262254)
chr6 (67-212)||(20679159-20679305)
[»] chr8 (4 HSPs)
chr8 (18-187)||(29515112-29515282)
chr8 (61-104)||(11596891-11596934)
chr8 (61-108)||(24785153-24785200)
chr8 (61-108)||(35195792-35195839)
[»] scaffold0012 (1 HSPs)
scaffold0012 (61-108)||(109091-109138)
[»] chr4 (1 HSPs)
chr4 (61-108)||(54908301-54908348)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 36732737 - 36733050
Alignment:
Q  1 ggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||| ||||||||||||||||    
T  36732737 ggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatattcgtctagaaagtgattcaaaattgtttattaacatggttacaaataa 36732836  T
Q  101 ttgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctattaaccgtagttgacactttgaggttcatcatactcagcgataagaca 200  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||     
T  36732837 ttgcaagactagttggacgaccacttcgttgattcagcgtatcaaaaatctattagacgtagttgacactttgaggttcatcatacttagcgataagac- 36732935  T
Q  201 ataatagaagtgcgat-----taacttgcgaatttcaacctcaccacaaattcttaaaattttgttattttagaaatccttcctaatgagcttgatagtc 295  Q
      ||||||||||||||     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  36732936 --aatagaagtgcgattaacgtaacttgcgaatttcaacctcaccacaaattcttgaaattttgttattttagaaatccctcctaatgagcttgatagtc 36733033  T
Q  296 tttcctttaatgatatt 312  Q
    |||| ||||||||||||    
T  36733034 tttcttttaatgatatt 36733050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 6205407 - 6205454
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  6205407 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 6205454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 6792826 - 6792779
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  6792826 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 6792779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 37752510 - 37752660
Alignment:
Q  1 ggggtgtgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataa 100  Q
    ||||| ||||||| ||||| |||||||| || ||||||||| |||||||| || || || | ||||||||||||||||||||||||||||||||||||||    
T  37752510 ggggtttgtattttggtttagagctagcttggcgtgatggaatttcacatctctgtatggagagtgattcaaaattgtttattgacatggttacaaataa 37752609  T
Q  101 ttgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatct 151  Q
    ||||||||||| | | |||||| |||| ||||||   ||||||| ||||||    
T  37752610 ttgcaagactaatgggacgaccccttcattgatttggcgtatcagaaatct 37752660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 5321571 - 5321690
Alignment:
Q  15 ggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaagactagtt 114  Q
    |||||||||||||| ||| |||||||| |||||||| ||  | || ||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |     
T  5321571 ggtttggagctagcttgaagtgatggaatttcacatctctatgtggaaagtgactcaaaattgcttattgatatggttacaaataattgcaagactaatg 5321670  T
Q  115 gaacgaccacttcgttgatt 134  Q
    |||||||| |||||||||||    
T  5321671 gaacgaccccttcgttgatt 5321690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 30901875 - 30902016
Alignment:
Q  13 tgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttat--tgacatggttacaaataattgcaagact 110  Q
    |||||||||||||||| || |||||||||||||||||| || || || || |||||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  30901875 tgggtttggagctagcctggcgtgatggagtttcacatctctgtgtggaaggtgattaaaaattgcttatattgacatggttacaaataattgcaagact 30901974  T
Q  111 agttgaacgaccacttcgttgattcaacgtatcaaaaatcta 152  Q
    |   | ||||||  |||||||||||  ||||||| |||||||    
T  30901975 aacgggacgacccattcgttgattcggcgtatcagaaatcta 30902016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 19552800 - 19552755
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaa 106  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||    
T  19552800 aaagtgattcaaaattagttattgacatggttacaaataattgcaa 19552755  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 9886505 - 9886377
Alignment:
Q  7 tgtatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaa 106  Q
    ||||||| ||||| |||||||| || | ||||||| |||||||| |  || || ||||||||    ||||||| ||||||||||||| | ||||||||||    
T  9886505 tgtatttcggtttagagctagcttgtcatgatggaatttcacatctttgtgtggaaagtgatcatgaattgttgattgacatggttaaacataattgcaa 9886406  T
Q  107 gactagttgaacgaccacttcgttgattc 135  Q
    ||||| | | |||||| || |||||||||    
T  9886405 gactaatgggacgacccctccgttgattc 9886377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 7797868 - 7797915
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  7797868 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 7797915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 8055189 - 8055142
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  8055189 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 8055142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 28705316 - 28705363
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  28705316 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 28705363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 46019233 - 46019186
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  46019233 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 46019186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 46077336 - 46077383
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||    
T  46077336 aaagtgattcaaaattgtttattgtcatgataacaaataattgcaaga 46077383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 49572869 - 49572822
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  49572869 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 49572822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 33695984 - 33695937
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    |||||||||||||| || ||||||||||||| ||||| ||||||||||    
T  33695984 aaagtgattcaaaaatgcttattgacatggtaacaaaaaattgcaaga 33695937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 41550268 - 41550089
Alignment:
Q  9 tatttgggtttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    ||||| || ||||||||||| || || ||||||||||||||| || || || || | |||||||||||| ||||||||||||||||||| || |||| ||    
T  41550268 tatttagggttggagctagcttggcgggatggagtttcacatctctgtgtggaaggcgattcaaaattgcttattgacatggttacaaacaactgcagga 41550169  T
Q  109 ctagttgaacgaccacttcgttgattcaacgtatcaaaaatctatt-aaccgtagttgacactttgaggttcatcatact 187  Q
    ||| | | |||||| |||||||||| |  ||||||| |||||| ||  | |||||||| ||| |||||||||||||||||    
T  41550168 ctaatgggacgaccccttcgttgatgcggcgtatcagaaatcttttggatcgtagttggcacgttgaggttcatcatact 41550089  T

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Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 6262130 - 6262254
Alignment:
Q  64 gtgattcaaaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctatt-aaccgtag 162  Q
    ||||||||||| || |||||||||||||| |||||||||||||||||| | | |||||| ||| |||||||| || ||||| |||||||||  |||||||    
T  6262130 gtgattcaaaactgcttattgacatggtttcaaataattgcaagactaatggtacgaccccttggttgattcgacatatcagaaatctattcgaccgtag 6262229  T
Q  163 ttgacactttgaggttcatcatact 187  Q
    ||| ||| |||||||| ||||||||    
T  6262230 ttggcacgttgaggtttatcatact 6262254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 20679305 - 20679159
Alignment:
Q  67 attcaaaattgtttattgacatggttacaaataattgcaagactagttgaacgaccacttcgttgattcaacgtatcaaaaatctatta-accgtagttg 165  Q
    ||||||||||| | ||| |||||||||||||||||||||||| ||   | |||| | ||| ||||||||  |||||||  |||||| || | ||||||||    
T  20679305 attcaaaattgct-attaacatggttacaaataattgcaagattaacgggacgatccctttgttgattcggcgtatcaggaatctactagatcgtagttg 20679207  T
Q  166 acactttgaggttcatcatactcagcgataagacaata-atagaagtg 212  Q
     ||| ||||||||||| |||||  |||| ||| ||||| |||||||||    
T  20679206 gcacgttgaggttcattatacttggcgagaaggcaatatatagaagtg 20679159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 29515282 - 29515112
Alignment:
Q  18 ttggagctagcatgacgtgatggagtttcacatatccgtctgaaaagtgattcaaaattgtttattgacatggttacaaataattgcaagactagttgaa 117  Q
    ||||||||||| |||||  |||||||||||||| |  || || || | |||||||||||| |||||||||| |||| |||||| |||| ||||| | | |    
T  29515282 ttggagctagcttgacggaatggagtttcacatctatgtgtggaaggcgattcaaaattgcttattgacatagttagaaataactgcaggactaatggga 29515183  T
Q  118 cgaccacttcgttgattcaacgtatcaaaaatctatt-aaccgtagttgacactttgaggttcatcatact 187  Q
    ||| | |||||||||| | |||||||| |||||| ||  |||||||||| ||| ||||  |||||||||||    
T  29515182 cgatcccttcgttgatgcgacgtatcagaaatcttttggaccgtagttggcacattgaaattcatcatact 29515112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 11596934 - 11596891
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgc 104  Q
    ||||||||||||||||| |||||||||||| |||||||||||||    
T  11596934 aaagtgattcaaaattgcttattgacatggatacaaataattgc 11596891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 24785153 - 24785200
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  24785153 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 24785200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 35195839 - 35195792
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  35195839 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 35195792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 109138 - 109091
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  109138 aaagtgattcaaaattgcttattgacatgataacaaataattgcaaga 109091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 54908348 - 54908301
Alignment:
Q  61 aaagtgattcaaaattgtttattgacatggttacaaataattgcaaga 108  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||||||||    
T  54908348 aaagtgattcaaaattgcttattgatatgataacaaataattgcaaga 54908301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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