View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_low_82 (Length: 322)

Name: NF14349_low_82
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_low_82
NF14349_low_82
[»] chr8 (4 HSPs)
chr8 (1-310)||(42479935-42480244)
chr8 (1-172)||(42467370-42467541)
chr8 (1-282)||(42472689-42472958)
chr8 (6-176)||(33362288-33362457)
[»] chr2 (3 HSPs)
chr2 (6-176)||(5087379-5087549)
chr2 (5-158)||(43524036-43524189)
chr2 (223-282)||(43523919-43523978)
[»] chr7 (3 HSPs)
chr7 (6-176)||(31420650-31420820)
chr7 (5-174)||(41595414-41595583)
chr7 (211-282)||(41595312-41595383)
[»] chr5 (5 HSPs)
chr5 (6-176)||(22271586-22271756)
chr5 (7-174)||(23122258-23122425)
chr5 (5-158)||(14008281-14008434)
chr5 (211-282)||(14008163-14008234)
chr5 (211-282)||(23122456-23122527)
[»] chr3 (5 HSPs)
chr3 (6-176)||(2735281-2735451)
chr3 (6-176)||(40924327-40924497)
chr3 (35-176)||(22127786-22127927)
chr3 (7-158)||(22510861-22511012)
chr3 (211-282)||(22511059-22511130)
[»] chr6 (2 HSPs)
chr6 (6-176)||(95953-96123)
chr6 (116-176)||(9303528-9303588)
[»] scaffold0005 (1 HSPs)
scaffold0005 (55-176)||(41152-41273)
[»] chr4 (1 HSPs)
chr4 (55-176)||(14798455-14798576)
[»] chr1 (2 HSPs)
chr1 (61-158)||(27132118-27132215)
chr1 (55-176)||(25535922-25536043)


Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 42479935 - 42480244
Alignment:
Q  1 aacttatgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccat 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42479935 aacttatgagcaaaacaatgaatgtgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccat 42480034  T
Q  101 catacccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaagagtggatacctcaaaattaatgtcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42480035 catacccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaagagcggatacctcaaaattaatgtcttt 42480134  T
Q  201 aacatgcacaatatcaaacaaccgctcttgtataaacccctttttatcaacaaatctcaaaacaagggccatttgttcctttcctgatttatcaagagct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42480135 aacatgcacaatatcaaacaaccgctcttgtataaacccctttttatcaacaaatctcaaaacaagggccatttgttcctttcctgatttatcaagagct 42480234  T
Q  301 ccataaacaa 310  Q
    |||| |||||    
T  42480235 ccatcaacaa 42480244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 42467370 - 42467541
Alignment:
Q  1 aacttatgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccat 100  Q
    |||||||| |||||||| ||||| |  |||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |    
T  42467370 aacttatgtgcaaaacagtgaatgtagtatgcagaaggacattgattcaaaaatagtgcttgtaagccattccattgttctctcatatcgcaggtaccgt 42467469  T
Q  101 catacccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaa 172  Q
    |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  42467470 cataaccttgaccacgaatgttagaaacatcaagattatgtcgagaaagtatagcacaaacttgttcattaa 42467541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 42472689 - 42472958
Alignment:
Q  1 aacttatgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccat 100  Q
    ||||||||  ||||||||||||| || |||||| |||||||||||||||||| |||||  || |||| |||||||||||||||||| ||||  || ||||    
T  42472689 aacttatgttcaaaacaatgaatgtggtatgcataaggacattcattcaaaattagtgtctgcaaactattccattgttctctcatatcgctagtgccat 42472788  T
Q  101 catacccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaagagtggatacctcaaaattaatgtcttt 200  Q
    ||||||||||||||||||| ||||||||||||||||| ||  |||||||||||||  ||| || |||||        |||  ||||||      ||||||    
T  42472789 catacccttgaccacgaatattagaaacatcaagattgtgtcgagaaagtatagcgtaaatttcttcct------ctgatggctcaaa------gtcttt 42472876  T
Q  201 aacatgcacaatatcaaacaaccgctcttgtataaacccctttttatcaacaaatctcaaaacaagggccatttgttccttt 282  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||    
T  42472877 aacatgcacaatatcaaaaaaccgctcttgtataaaaccatttttatcaacaaatctcaaaacaagagccatttgttccttt 42472958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 33362457 - 33362288
Alignment:
Q  6 atgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatac 105  Q
    |||||||||||| || | ||  || ||| ||||||| || |||| |||||| || |||||||||||||||| | ||||||| |  |  | ||| ||||||    
T  33362457 atgagcaaaacagtggacatagtaagcataaggacaatctttcataaatag-gcttgtaaaccattccattctcctctcatatttctagcaccgtcatac 33362359  T
Q  106 ccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaagagt 176  Q
    ||||||||||||||||| ||||||||||| |||||  ||||||||||| |||| |||  ||| ||||||||    
T  33362358 ccttgaccacgaatgtttgaaacatcaaggttatgtcgagaaagtataccacatactgcttcattaagagt 33362288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 5087549 - 5087379
Alignment:
Q  6 atgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatac 105  Q
    ||||||||||||||| | ||  || ||| ||||||| || |||| ||| ||||| ||||||| |||||||| | ||||||| | ||  | ||||||||||    
T  5087549 atgagcaaaacaatggacatagtaagcataaggacaatctttcataaaaagtgcttgtaaacaattccattctcctctcatattgctagcaccatcatac 5087450  T
Q  106 ccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaagagt 176  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||| |||| |||  ||||||||||||    
T  5087449 ccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtataccacatactgcttccttaagagt 5087379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 43524189 - 43524036
Alignment:
Q  5 tatgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcata 104  Q
    |||||||||||||||| || |  |||||| ||||||| || |||| ||| | ||| |||||||| ||||||| | ||||||| | ||  | |||||||||    
T  43524189 tatgagcaaaacaatggatgtagtatgcataaggacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccatcata 43524090  T
Q  105 cccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcaca 158  Q
    |||||||||||||| ||||||||||||||| |||||  ||||||||||| ||||    
T  43524089 cccttgaccacgaaggttagaaacatcaaggttatgtcgagaaagtatatcaca 43524036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 43523978 - 43523919
Alignment:
Q  223 cgctcttgtataaacccctttttatcaacaaatctcaaaacaagggccatttgttccttt 282  Q
    ||||||||||| || || | ||||||||||||||| || ||||| |||||||||||||||    
T  43523978 cgctcttgtattaaaccatctttatcaacaaatcttaacacaagagccatttgttccttt 43523919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 31420820 - 31420650
Alignment:
Q  6 atgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatac 105  Q
    |||||||||||| || | ||  || ||| ||||||| || |||| ||| ||||| |||||||||||||||| | ||||||| | ||  | ||| ||||||    
T  31420820 atgagcaaaacagtggacatagtaagcataaggacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatac 31420721  T
Q  106 ccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaagagt 176  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||| |||| |||  ||||||||||||    
T  31420720 ccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtataccacatactgcttccttaagagt 31420650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 41595583 - 41595414
Alignment:
Q  5 tatgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcata 104  Q
    |||||||||||||||| || |  |||||| ||||||| || |||| ||| | ||| |||||||| ||||||| | ||||||| | ||  | |||||||||    
T  41595583 tatgagcaaaacaatggatgtagtatgcataaggacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccatcata 41595484  T
Q  105 cccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaaga 174  Q
    |||||||||||||| ||||||||||||||| |||||  ||||||||||| |||| |||  ||||||||||    
T  41595483 cccttgaccacgaaggttagaaacatcaaggttatgtcgagaaagtatatcacacactgcttccttaaga 41595414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 41595383 - 41595312
Alignment:
Q  211 atatcaaacaaccgctcttgtataaacccctttttatcaacaaatctcaaaacaagggccatttgttccttt 282  Q
    |||||||| || ||||||||||| || || | ||||||||||||||| || ||||| |||||||||||||||    
T  41595383 atatcaaaaaatcgctcttgtattaaaccatctttatcaacaaatcttaacacaagagccatttgttccttt 41595312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 22271586 - 22271756
Alignment:
Q  6 atgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatac 105  Q
    |||||||||||| || | ||  || ||| ||||||| || |||| ||| ||||| |||||||||||||||| | ||||||| | ||  | ||| ||||||    
T  22271586 atgagcaaaacagtggacatagtaagcataaggacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatac 22271685  T
Q  106 ccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaagagt 176  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||| |||| |||  ||||||||||||    
T  22271686 ccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtataccacatactgcttccttaagagt 22271756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 23122258 - 23122425
Alignment:
Q  7 tgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatacc 106  Q
    |||||||||||||| || |  |||||| ||||||| || |||| ||| | ||| |||||||| ||||||| | ||||||| | ||  | |||||||||||    
T  23122258 tgagcaaaacaatggatgtagtatgcataaggacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccatcatacc 23122357  T
Q  107 cttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaaga 174  Q
    |||||||||||| ||||||||||||||| |||||  ||||||||||| |||| |||  ||||||||||    
T  23122358 cttgaccacgaaggttagaaacatcaaggttatgtcgagaaagtatatcacacactgcttccttaaga 23122425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 14008434 - 14008281
Alignment:
Q  5 tatgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcata 104  Q
    |||||||||||||||| || |  |||||| ||||||| || |||| ||| | ||| |||||||| ||||||| | ||||||| | ||  | |||||||||    
T  14008434 tatgagcaaaacaatggatgtagtatgcataaggacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccatcata 14008335  T
Q  105 cccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcaca 158  Q
    || ||||||||||| ||||||||||||||| |||||  ||||||||||| ||||    
T  14008334 ccattgaccacgaaggttagaaacatcaaggttatgtcgagaaagtatatcaca 14008281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 14008234 - 14008163
Alignment:
Q  211 atatcaaacaaccgctcttgtataaacccctttttatcaacaaatctcaaaacaagggccatttgttccttt 282  Q
    |||||||| || ||||||||||| || || | ||||||||||||||| || ||||| |||||||||||||||    
T  14008234 atatcaaaaaatcgctcttgtattaaaccatctttatcaacaaatcttaacacaagagccatttgttccttt 14008163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 23122456 - 23122527
Alignment:
Q  211 atatcaaacaaccgctcttgtataaacccctttttatcaacaaatctcaaaacaagggccatttgttccttt 282  Q
    |||||||| || ||||||||||| || || | ||||||||||||||| || || || |||||||||||||||    
T  23122456 atatcaaaaaatcgctcttgtattaaaccatctttatcaacaaatcttaacaccagagccatttgttccttt 23122527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 2735451 - 2735281
Alignment:
Q  6 atgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatac 105  Q
    |||||||||||| || | ||  || ||| ||||||| || |||| ||| ||||| |||||||||||||||| | ||||||| | ||  | ||| ||||||    
T  2735451 atgagcaaaacagtggacatagtaagcataaggacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatac 2735352  T
Q  106 ccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaagagt 176  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||| |||| |||  ||||||||||||    
T  2735351 ccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtataccacatactgcttccttaagagt 2735281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 40924497 - 40924327
Alignment:
Q  6 atgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatac 105  Q
    |||||||||||| || | ||  || ||| ||||||| || |||| ||| ||||| |||||||||||||||| | ||||||| | ||  | ||| ||||||    
T  40924497 atgagcaaaacagtggacatagtaagcataaggacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatac 40924398  T
Q  106 ccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaagagt 176  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||| |||| |||  ||||||||||||    
T  40924397 ccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtataccacatactgcttccttaagagt 40924327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 176
Target Start/End: Original strand, 22127786 - 22127927
Alignment:
Q  35 aaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatacccttgaccacgaatgttagaaacatcaag 134  Q
    ||||||| || |||| ||||||||| |||||||||||||||| | ||||||| | ||  | ||| |||||||||||||||| |||||||||||| ||||     
T  22127786 aaggacaatctttcataaatagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacaaatgttagaaacgtcaaa 22127885  T
Q  135 attatgctgagaaagtatagcacaaacttgttccttaagagt 176  Q
     |||||  || |||||||| |||| |||  ||||||||||||    
T  22127886 gttatgtcgaaaaagtataccacatactgcttccttaagagt 22127927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 22510861 - 22511012
Alignment:
Q  7 tgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatacc 106  Q
    |||||||||||||| || |  |||||| ||||||  || |||| ||| | ||| |||||||| ||||||| | ||||||| | ||  | ||||| |||||    
T  22510861 tgagcaaaacaatggatgtagtatgcataaggacgatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgcttgcaccattatacc 22510960  T
Q  107 cttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcaca 158  Q
    |||||||| ||| ||||||||||||||| |||||  ||||||||||| ||||    
T  22510961 cttgaccatgaaggttagaaacatcaaggttatgtcgagaaagtatatcaca 22511012  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 22511059 - 22511130
Alignment:
Q  211 atatcaaacaaccgctcttgtataaacccctttttatcaacaaatctcaaaacaagggccatttgttccttt 282  Q
    |||||||| || ||||||||||| || || | ||||||||||||||| || ||||| |||||||||||||||    
T  22511059 atatcaaaaaatcgctcttgtattaaaccatctttatcaacaaatcttaacacaagagccatttgttccttt 22511130  T

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Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 96123 - 95953
Alignment:
Q  6 atgagcaaaacaatgaatatgatatgcagaaggacattcattcaaaaatagtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatac 105  Q
    |||||||||||| || | ||  || ||| ||||||| || |||| ||| ||||| |||||||||||||||| | ||||||| | ||  | ||| ||||||    
T  96123 atgagcaaaacagtggacatagtaagcataaggacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatac 96024  T
Q  106 ccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaagagt 176  Q
    ||||||||||||||||||||||||||||| |||||  ||||||||||| |||| | |  ||||||||||||    
T  96023 ccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtataccacatattgcttccttaagagt 95953  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 9303588 - 9303528
Alignment:
Q  116 gaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaagagt 176  Q
    ||||||||||||||||||| |||||  ||||||||||| |||| ||   ||||||||||||    
T  9303588 gaatgttagaaacatcaaggttatgtcgagaaagtataccacataccgtttccttaagagt 9303528  T

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Target: scaffold0005 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 41273 - 41152
Alignment:
Q  55 agtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatacccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatag 154  Q
    ||||| |||||||||||||||| | ||||||| | ||  | ||| ||||||||||||||||||||||||||||||||||| |||||  |||||||||||     
T  41273 agtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtatac 41174  T
Q  155 cacaaacttgttccttaagagt 176  Q
    |||| |||  ||||||||||||    
T  41173 cacatactgcttccttaagagt 41152  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 14798455 - 14798576
Alignment:
Q  55 agtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatacccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatag 154  Q
    ||||| |||||||||||||||| | ||||||| | ||  | ||| ||||||||||||||||||||||||||||||||||| |||||  |||||||||||     
T  14798455 agtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtatac 14798554  T
Q  155 cacaaacttgttccttaagagt 176  Q
    |||| |||  ||||||||||||    
T  14798555 cacatactgcttccttaagagt 14798576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 27132215 - 27132118
Alignment:
Q  61 tgtaaaccattccattgttctctcatttcgcaggtaccatcatacccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcaca 158  Q
    |||||||||||||||| | ||||||| | ||  | ||| ||||||||||||||||||||||||||||||||||| |||||  ||||||||||| ||||    
T  27132215 tgtaaaccattccattctcctctcatattgccagcaccgtcatacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtataccaca 27132118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 25536043 - 25535922
Alignment:
Q  55 agtgcatgtaaaccattccattgttctctcatttcgcaggtaccatcatacccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatag 154  Q
    ||||| |||||||||||||||| | ||||||| |  |    ||| ||||||| ||| |||||| |||||||||||||||| |||||   ||||||||||     
T  25536043 agtgcttgtaaaccattccattctcctctcatattactaacaccttcataccattggccacgattgttagaaacatcaaggttatgtctagaaagtatac 25535944  T
Q  155 cacaaacttgttccttaagagt 176  Q
    |||| |||  ||||||||||||    
T  25535943 cacatactacttccttaagagt 25535922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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