View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_89 (Length: 298)
Name: NF14349_low_89
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_89 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 71 - 283
Target Start/End: Complemental strand, 11164781 - 11164569
Alignment:
| Q |
71 |
cgaacaagggacaacattagcatccacactaggaacaacattattatcaccaacattaaccttaacattatcactactagtagaacctaattccacaaca |
170 |
Q |
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| T |
11164781 |
cgaacaagtaacaacattagcatccacactaggaacaacattattatcaccaacattaaccttaacattatcactactagtagaacctaattccacaaca |
11164682 |
T |
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| Q |
171 |
ctcttgttatcttcaccttcacttttacaatcaccctttcgttgtttcctccgtgatggaccaaacccagaataataatagaattcattactattcgaac |
270 |
Q |
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| T |
11164681 |
ctcttgttatcttcaccttcacttttacaatcaccctttcgttgtttcctccgcgatggaccaaacccagaataataatagaattcattactattcgaac |
11164582 |
T |
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| Q |
271 |
ccgaagctgaacc |
283 |
Q |
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| T |
11164581 |
ccgaagctgaacc |
11164569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 118 - 281
Target Start/End: Original strand, 4703452 - 4703606
Alignment:
| Q |
118 |
caccaacattaaccttaacattatcactactagtagaacctaattccacaacactcttgttatcttcaccttcacttttacaatcaccctttcgttgttt |
217 |
Q |
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||||||||||||||||||||| || ||||||| || |||||| | ||||||||||||||||||||||| ||| ||||| ||||| |||||| | |
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| T |
4703452 |
caccaacattaaccttaacatcatgactactacta---cctaatgctacaacactcttgttatcttcaccatcattttta---tcacctcttcgtt---t |
4703542 |
T |
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| Q |
218 |
cctccgtgatggaccaaacccagaataataatagaattcattactattcgaacccgaagctgaa |
281 |
Q |
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| T |
4703543 |
ccctcgtggtggaccaaacccagaataaaaatagaattcattattattcgaacctgaagctgaa |
4703606 |
T |
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