View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_low_9 (Length: 607)

Name: NF14349_low_9
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_low_9
NF14349_low_9
[»] chr3 (33 HSPs)
chr3 (9-591)||(3745662-3746244)
chr3 (182-387)||(3754458-3754663)
chr3 (177-384)||(4157927-4158137)
chr3 (179-387)||(4142119-4142330)
chr3 (180-377)||(2678385-2678582)
chr3 (181-375)||(2686299-2686496)
chr3 (193-289)||(2696731-2696827)
chr3 (193-288)||(803217-803312)
chr3 (172-287)||(2459233-2459348)
chr3 (194-241)||(2631361-2631408)
chr3 (193-283)||(956343-956433)
chr3 (183-241)||(2644351-2644409)
chr3 (183-241)||(2659141-2659199)
chr3 (186-283)||(1007423-1007520)
chr3 (186-283)||(1022451-1022548)
chr3 (194-286)||(1891064-1891156)
chr3 (179-282)||(989359-989462)
chr3 (180-283)||(7432040-7432143)
chr3 (194-241)||(37753345-37753392)
chr3 (242-287)||(12133037-12133082)
chr3 (196-241)||(13498228-13498273)
chr3 (194-241)||(754609-754656)
chr3 (194-241)||(2492086-2492133)
chr3 (412-451)||(4142346-4142385)
chr3 (181-287)||(968629-968735)
chr3 (186-252)||(1940571-1940637)
chr3 (179-241)||(9587170-9587232)
chr3 (198-255)||(997566-997623)
chr3 (198-255)||(1013956-1014013)
chr3 (186-287)||(1936972-1937073)
chr3 (196-241)||(9561987-9562032)
chr3 (193-241)||(2442043-2442091)
chr3 (415-451)||(3754403-3754439)
[»] chr5 (14 HSPs)
chr5 (179-387)||(11081668-11081879)
chr5 (180-382)||(1427679-1427881)
chr5 (186-255)||(23766854-23766923)
chr5 (186-255)||(23816702-23816771)
chr5 (182-283)||(23861014-23861115)
chr5 (196-241)||(20301447-20301492)
chr5 (182-247)||(23769634-23769699)
chr5 (182-247)||(23819482-23819547)
chr5 (195-249)||(3181713-3181767)
chr5 (196-241)||(20292999-20293044)
chr5 (182-247)||(23732165-23732230)
chr5 (182-247)||(23764248-23764313)
chr5 (182-247)||(23814081-23814146)
chr5 (104-148)||(1427603-1427647)
[»] chr7 (1 HSPs)
chr7 (242-379)||(1078226-1078363)
[»] chr1 (2 HSPs)
chr1 (179-246)||(51381440-51381507)
chr1 (193-233)||(25609376-25609416)
[»] chr4 (3 HSPs)
chr4 (193-287)||(20019771-20019865)
chr4 (193-241)||(20016184-20016232)
chr4 (174-255)||(22672107-22672188)
[»] scaffold0044 (1 HSPs)
scaffold0044 (194-246)||(89142-89194)
[»] chr8 (1 HSPs)
chr8 (179-255)||(19727871-19727947)
[»] chr2 (3 HSPs)
chr2 (193-241)||(36577370-36577418)
chr2 (496-524)||(11237414-11237442)
chr2 (194-246)||(33038159-33038211)
[»] chr6 (2 HSPs)
chr6 (193-233)||(19119075-19119115)
chr6 (193-233)||(19126369-19126409)


Alignment Details
Target: chr3 (Bit Score: 539; Significance: 0; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 9 - 591
Target Start/End: Complemental strand, 3746244 - 3745662
Alignment:
Q  9 aacacagacttctggaacttttctaaaatcagtagacttcaaagtacctctcttgatatcataaagaatcaaacatttgtcaacaccccctataaacttc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3746244 aacacagacttctggaacttttctaaaatcagtagacttcaaagtacctctcttgatatcataaagaatcaaacatttgtcaacaccccctataaacttc 3746145  T
Q  109 agtagcacttgaccatcctcaaagatatatactgctttggcgcgtacatgagaattagttggttctggcttgtaaggaatagtcaacaatttagtccaag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3746144 agtagcacttgaccatcctcaaagatatatactgctttggcgcgtacatgagaattagttggttctggcttgtaaggaatagtcaacaatttagtccaag 3746045  T
Q  209 actcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3746044 actcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatc 3745945  T
Q  309 tacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaataaagcatggacataccctacccgattttannnnn 408  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  3745944 tatccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaataaagcatggacataccctacccgattttattttt 3745845  T
Q  409 nnngagaacaaccaattaatagtgccactcacaaatttcccctatcgctcaacaggagcaccgccaagaggatactcctgaatgcttcttctccaaaaat 508  Q
       ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  3745844 tttgagaacaaccaattaatagtgccactcacaaatttccccgatcgctcaaaaggagcaccgccaagaggatactcctgagtgcttcttctccaaaaat 3745745  T
Q  509 tggtacccaaagtatgaacttctacttcagttttgatatcagttttgatatcccggtagataacgtacacaagaacaacaacc 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3745744 tggtacccaaagtatgaacttctacttcagttttgatatcagttttgatatcccggtagataaagtacacaagaacaacaacc 3745662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 182 - 387
Target Start/End: Complemental strand, 3754663 - 3754458
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaac 281  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||||    
T  3754663 aaggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacaccagaagtcacgcacaagcaatccctcaaaac 3754564  T
Q  282 acccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaataaagcat 381  Q
    || ||||| ||||| |||||||||||| |||||||| | | |||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |    
T  3754563 actcaaagccgacatgtcacacacatccacccctcccaaattaggaggtgaaatcttttgatatgactcctttgccaaatcaaaagaaacaataaagcgt 3754464  T
Q  382 ggacat 387  Q
    ||||||    
T  3754463 ggacat 3754458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 177 - 384
Target Start/End: Original strand, 4157927 - 4158137
Alignment:
Q  177 cttgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagt---cacgcacaagcaatcc 273  Q
    ||||||||  ||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||||| ||||| |||||||||   ||||||||||||||||    
T  4157927 cttgtaagagatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcataaccagaagtggtcacgcacaagcaatcc 4158026  T
Q  274 cttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaa 373  Q
    || ||||||||||||| |||||||||||||||||| |||||||| | | |||||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  4158027 ctcaaaacacccaaagccgacaagtcacacacatccacccctcccaaattaggaggtgaaatcttttgataagactcctttgccaaatcaaatgaaacaa 4158126  T
Q  374 taaagcatgga 384  Q
    |||||||||||    
T  4158127 taaagcatgga 4158137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 179 - 387
Target Start/End: Original strand, 4142119 - 4142330
Alignment:
Q  179 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtc---acgcacaagcaatccct 275  Q
    ||||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||||| |||||  |||||||||   |||||||||||||||||    
T  4142119 tgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccct 4142218  T
Q  276 taaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaata 375  Q
     ||||||||||||  |||||||||||  ||||| |||||||| | | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  4142219 caaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatcttttgataagactcctttgccaaatcaaaagaaacaata 4142318  T
Q  376 aagcatggacat 387  Q
    ||||||||||||    
T  4142319 aagcatggacat 4142330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 180 - 377
Target Start/End: Original strand, 2678385 - 2678582
Alignment:
Q  180 gtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaa 279  Q
    |||||||||||| |||||||||||||| |||||||  ||| ||||||  ||||||| ||||| |||||||||| |||||| ||||||||||||| | |||    
T  2678385 gtaaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcaccacaagtcaagcacaagcaatccttcaaa 2678484  T
Q  280 acacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaataaa 377  Q
    |||||||| |  | ||  | || ||||| | ||||||||  |||||||||||| | ||||||| ||| ||| ||||||||||||||||||||||||||    
T  2678485 acacccaaggtaggcattttacccacatttgcccctccataactaggaggtgatagcttttgataagactcttttgccaaatcaaaagaaacaataaa 2678582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 181 - 375
Target Start/End: Original strand, 2686299 - 2686496
Alignment:
Q  181 taaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataat---ccaaatatcatcaccagaagtcacgcacaagcaatccctta 277  Q
    ||||||||||| ||||||||| ||||||||||||  ||| ||||||||||||||||   ||||| |||||||||| |  ||| |||||| |||||||| |    
T  2686299 taaggaatagtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcaccacagatcaagcacaaacaatccctca 2686398  T
Q  278 aaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaata 375  Q
    |||||||||| |    || || ||| |||||||||||||||  ||||||||| || ||||||||| ||| ||| ||||||||||||||||||||||||    
T  2686399 aaacacccaaggtaagcatgttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgccaaatcaaaagaaacaata 2686496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 193 - 289
Target Start/End: Original strand, 2696731 - 2696827
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaag 289  Q
    ||||||||| ||||||||||||  ||| ||||||||||||||||||||| ||||| | | ||| ||| || ||||||||||||||| ||||||||||    
T  2696731 aacaatttaatccaagactctttatttccatattccttcataatccaaacatcatgatcggaaatcaagcccaagcaatcccttaacacacccaaag 2696827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 193 - 288
Target Start/End: Original strand, 803217 - 803312
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaa 288  Q
    ||||| ||||||||||||||||  ||| ||||||| ||||||| ||||| ||||||||||||| ||| ||||||||||||||| || | |||||||    
T  803217 aacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaaatcatgcacaagcaatccctcaacatacccaaa 803312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 287
Target Start/End: Complemental strand, 2459348 - 2459233
Alignment:
Q  172 tctggcttgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaat 271  Q
    |||||| |||||| ||  || |||||||| |||||||||||||  ||| ||||||||||||||||||||| | ||| ||||||| | | | |||||||||    
T  2459348 tctggcatgtaagaaacggtaaacaattttgtccaagactctttatttccatattccttcataatccaaacaacatgaccagaaattatggacaagcaat 2459249  T
Q  272 cccttaaaacacccaa 287  Q
    | || || ||||||||    
T  2459248 cactcaatacacccaa 2459233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 2631408 - 2631361
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaa 2631361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 956433 - 956343
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacac 283  Q
    |||||||||  |||||||||||  ||| ||||||||||||||||||||| |||   |||| || ||| ||||||||||||||| |||||||    
T  956433 aacaatttatgccaagactctttttttccatattccttcataatccaaacatcgcaaccaaaaatcatgcacaagcaatccctgaaaacac 956343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 2644351 - 2644409
Alignment:
Q  183 aggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||  |||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  2644351 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaa 2644409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 2659141 - 2659199
Alignment:
Q  183 aggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||  |||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  2659141 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaa 2659199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 1007520 - 1007423
Alignment:
Q  186 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacac 283  Q
    |||||| |||||||||||||| ||||| |  ||| ||||||||||||| | ||||| |||||||||| ||  ||||  |||||||||||| |||||||    
T  1007520 aatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcatcaccacaaaacacggtcaagcaatccctaaaaacac 1007423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 1022548 - 1022451
Alignment:
Q  186 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacac 283  Q
    |||||| |||||||||||||| ||||| |  ||| ||||||||||||| | ||||| |||||||||| ||  ||||  |||||||||||| |||||||    
T  1022548 aatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcatcaccacaaaacacggtcaagcaatccctaaaaacac 1022451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 1891064 - 1891156
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacaccca 286  Q
    |||||||||||||||| ||||  ||| ||| ||||||||||||||||| ||||| |||| ||  || |||||| |||||||| || |||||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaacatcatgaccaaaaaccaggcacaaacaatccctcaacacaccca 1891156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 989462 - 989359
Alignment:
Q  179 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaa 278  Q
    |||||| |||||| ||||||||||||||||||||||  ||| | || || ||||| | ||||| |||||||||||||   | |||||||||||| || ||    
T  989462 tgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcaccagaaaaaatgcacaagcaatctctcaa 989363  T
Q  279 aaca 282  Q
    ||||    
T  989362 aaca 989359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 7432040 - 7432143
Alignment:
Q  180 gtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaa 279  Q
    ||||| ||| || |||||||||||||| || ||||  ||| |||||||||||||| |||||| ||||| ||||| |   | ||||||||||||||||||     
T  7432040 gtaagaaatggtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatcatgaccagcaaggatgcacaagcaatcccttaat 7432139  T
Q  280 acac 283  Q
    ||||    
T  7432140 acac 7432143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 37753345 - 37753392
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaa 37753392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 12133082 - 12133037
Alignment:
Q  242 tatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaa 287  Q
    ||||||||| |||||||| |||||||||||||||||| ||||||||    
T  12133082 tatcatcacgagaagtcaggcacaagcaatcccttaacacacccaa 12133037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 13498273 - 13498228
Alignment:
Q  196 aatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaa 13498228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 754609 - 754656
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||||| | | |||| ||||||||||||||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaa 754656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 2492133 - 2492086
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||| | ||| |||| ||||||||||||||||    
T  2492133 acaatttagtccaagactctcgatttccatactccttcataatccaaa 2492086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 451
Target Start/End: Original strand, 4142346 - 4142385
Alignment:
Q  412 gagaacaaccaattaatagtgccactcacaaatttcccct 451  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  4142346 gagaacaaccaattaattgtgccactcacaaattccccct 4142385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 968735 - 968629
Alignment:
Q  181 taaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaa 280  Q
    |||| |||||| || ||||||||||| |||||||  ||| ||| ||||||||||| ||||| ||||| |||   | ||| |||||| |||||||| || |    
T  968735 taagaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaaca 968636  T
Q  281 cacccaa 287  Q
    |||||||    
T  968635 cacccaa 968629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 1940571 - 1940637
Alignment:
Q  186 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcacca 252  Q
    |||||| |||||||||||||| || ||||| ||| ||| ||||||||||| ||||| ||||| ||||    
T  1940571 aatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcatgacca 1940637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 9587170 - 9587232
Alignment:
Q  179 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    ||||||||||| |  ||||||| ||||||| |||||  ||| |||||||||||||||||||||    
T  9587170 tgtaaggaatattgtacaattttgtccaaggctctttatttccatattccttcataatccaaa 9587232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 997623 - 997566
Alignment:
Q  198 tttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 255  Q
    |||||||||||||||||  ||| ||||||||||||| | ||||| | |||||||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaa 997566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 1014013 - 1013956
Alignment:
Q  198 tttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 255  Q
    |||||||||||||||||  ||| ||||||||||||| | ||||| | |||||||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaa 1013956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 1936972 - 1937073
Alignment:
Q  186 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacaccc 285  Q
    |||||| |||||||||| ||| || ||||  |||  |||||||||||||| ||||| ||||| |||| ||  || |||||| |||||||| || ||||||    
T  1936972 aatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatcataaccaaaaaccatgcacaaacaatccctcaacacaccc 1937071  T
Q  286 aa 287  Q
    ||    
T  1937072 aa 1937073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 9561987 - 9562032
Alignment:
Q  196 aatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||| ||| |||| || |||||||||||||    
T  9561987 aatttagtccaagactcttgatttccatactcattcataatccaaa 9562032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 2442091 - 2442043
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    ||||||||||||||||| ||||  ||| |||| ||||||||||||||||    
T  2442091 aacaatttagtccaagaatctttatttccatactccttcataatccaaa 2442043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 451
Target Start/End: Complemental strand, 3754439 - 3754403
Alignment:
Q  415 aacaaccaattaatagtgccactcacaaatttcccct 451  Q
    |||||||||||||| |||||||||||||||| |||||    
T  3754439 aacaaccaattaattgtgccactcacaaattccccct 3754403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 179 - 387
Target Start/End: Complemental strand, 11081879 - 11081668
Alignment:
Q  179 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtc---acgcacaagcaatccct 275  Q
    ||||||||||||| ||||||||||||||||||||||  ||| |||| |||||||||| ||||| |||||||| || ||||   || ||||||||||||||    
T  11081879 tgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcatcactagtagtcgtcacacacaagcaatccct 11081780  T
Q  276 taaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaata 375  Q
     ||||||||||||| |||||||| || |||||| |||||| | | | |||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||    
T  11081779 caaaacacccaaagccgacaagttacgcacatccaccccttccaaattaggaggtgaaatcttttgataagactcctttgccaaatcgaaacaaacaata 11081680  T
Q  376 aagcatggacat 387  Q
    |||| |||||||    
T  11081679 aagcgtggacat 11081668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 180 - 382
Target Start/End: Original strand, 1427679 - 1427881
Alignment:
Q  180 gtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaa 279  Q
    ||||| ||| || |||| |||| |||||||||||   ||| |||| || ||||||| ||||| |||||||||| ||| || | ||||| || |||||| |    
T  1427679 gtaagaaattgtgaacagtttaatccaagactctgtatttccatactctttcataacccaaacatcatcaccataagacaaggacaagaaaccccttaga 1427778  T
Q  280 acacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaataaagc 379  Q
    |||||||| | ||| ||| ||| ||||||||| ||||||  | | ||| |  ||| ||||||| ||| ||||||  |||||||||||| |||||||||||    
T  1427779 acacccaaggtcgagaagccactcacatctactcctccacgatttggaagcaaaaccttttgataagactccttccccaaatcaaaagcaacaataaagc 1427878  T
Q  380 atg 382  Q
    |||    
T  1427879 atg 1427881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 23766854 - 23766923
Alignment:
Q  186 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 255  Q
    |||||| ||||||||||||||||||||||  ||| ||||||| ||||||||||||| ||||| |||||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaa 23766923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 23816702 - 23816771
Alignment:
Q  186 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 255  Q
    |||||| ||||||||||||||||||||||  ||| ||||||| ||||||||||||| ||||| |||||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaa 23816771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 23861014 - 23861115
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaac 281  Q
    |||||||||| |||||||||||||||||| ||| | |  ||||||||||||| ||||||| ||||| || |||| ||  |||||| |||| ||| |||||    
T  23861014 aaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaattcctgaaaac 23861113  T
Q  282 ac 283  Q
    ||    
T  23861114 ac 23861115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 20301492 - 20301447
Alignment:
Q  196 aatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||   ||||||||||||||||||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaa 20301447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 23769634 - 23769699
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 247  Q
    |||| ||||| |||||||||||||||||| |||  ||  ||||||||||||||||||||| |||||    
T  23769634 aaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23769699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 23819482 - 23819547
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 247  Q
    |||| ||||| |||||||||||||||||| |||  ||  ||||||||||||||||||||| |||||    
T  23819482 aaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23819547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 3181767 - 3181713
Alignment:
Q  195 caatttagtccaagactcttgctttgcatattccttcataatccaaatatcatca 249  Q
    ||||||| ||||||||||||  ||| ||||||||||||||| ||||| |||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacatcatca 3181713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 20293044 - 20292999
Alignment:
Q  196 aatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||   || |||||||||||||||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaa 20292999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 23732230 - 23732165
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 247  Q
    |||||||||| |||| |||| |||||||| |||  ||  ||||||||||||||||||||| |||||    
T  23732230 aaggaatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatcat 23732165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 23764248 - 23764313
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 247  Q
    |||||||||| |||||| ||||||||||| ||| | |  ||||||||||||| ||||||| |||||    
T  23764248 aaggaatagtgaacaatgtagtccaagacgctttcatcccatattccttcattatccaaacatcat 23764313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 23814081 - 23814146
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 247  Q
    |||||||||| |||||||||||||||||| ||  | |  ||||||||||||| ||||||| |||||    
T  23814081 aaggaatagtgaacaatttagtccaagacgctgtcatcccatattccttcattatccaaacatcat 23814146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 1427603 - 1427647
Alignment:
Q  104 acttcagtagcacttgaccatcctcaaagatatatactgctttgg 148  Q
    ||||||| ||||||||| |||||||||||||||||| ||| ||||    
T  1427603 acttcagcagcacttgatcatcctcaaagatatatattgccttgg 1427647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 379
Target Start/End: Original strand, 1078226 - 1078363
Alignment:
Q  242 tatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttg 341  Q
    ||||||||| ||||| || ||||||||||||||| || |||||||| |   | |||| |||||||||||||||||||  |  ||||||  ||| ||||||    
T  1078226 tatcatcacgagaagccaggcacaagcaatccctcaacacacccaaggctaagaagtgacacacatctacccctccataatcaggaggcaaaaccttttg 1078325  T
Q  342 aaaagtctcctttgccaaatcaaaagaaacaataaagc 379  Q
    | |||  || ||| ||||||||||||||||||||||||    
T  1078326 ataagattcttttcccaaatcaaaagaaacaataaagc 1078363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 51381440 - 51381507
Alignment:
Q  179 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatca 246  Q
    ||||||||||| | ||||||||||||||||||||||  ||| ||||||| ||||||||||||||||||    
T  51381440 tgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 25609376 - 25609416
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcat 233  Q
    |||||||||||||||||||||||  || |||||||||||||    
T  25609376 aacaatttagtccaagactcttgaatttcatattccttcat 25609416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 20019771 - 20019865
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaa 287  Q
    |||||||||||||||||||||||  || ||||||||||||| | ||||| ||||| ||||||| | | ||||||| |||| ||||| ||||||||    
T  20019771 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacacccaa 20019865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 20016184 - 20016232
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||||||  || ||||||||||||| |||||||    
T  20016184 aacaatttagtccaagactcttgaattccatattccttcatgatccaaa 20016232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 22672107 - 22672188
Alignment:
Q  174 tggcttgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 255  Q
    |||| |||||| |||||| ||||||||||||||||| || |  ||| ||||||||||||| | |||||  || |||||||||    
T  22672107 tggcatgtaagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaacgtcgtcaccagaa 22672188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 89194 - 89142
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaatatca 246  Q
    |||||||||||||||||||||  ||| ||||||||||||||| ||||||||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 19727947 - 19727871
Alignment:
Q  179 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 255  Q
    |||||| |||||| |||| ||||||||| |||||||  |||||||||||  |||||| ||||| |||||||||||||    
T  19727947 tgtaagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcaccagaa 19727871  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 36577418 - 36577370
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    ||||||||| ||||||||||||  ||| |||||||||||||||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaa 36577370  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 524
Target Start/End: Complemental strand, 11237442 - 11237414
Alignment:
Q  496 cttctccaaaaattggtacccaaagtatg 524  Q
    |||||||||||||||||||||||||||||    
T  11237442 cttctccaaaaattggtacccaaagtatg 11237414  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 33038211 - 33038159
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaatatca 246  Q
    ||||| |||||||||||| ||  ||| ||||||||||||||||||||| ||||    
T  33038211 acaatctagtccaagactttttgtttccatattccttcataatccaaacatca 33038159  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 19119115 - 19119075
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcat 233  Q
    ||||||||||||||||||||||  ||| |||||||||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcat 19119075  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 19126409 - 19126369
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcat 233  Q
    ||||||||||||||||||||||  ||| |||||||||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcat 19126369  T

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