View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14350_low_2 (Length: 293)

Name: NF14350_low_2
Description: NF14350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14350_low_2
NF14350_low_2
[»] chr8 (25 HSPs)
chr8 (1-280)||(45105524-45105810)
chr8 (163-203)||(7553673-7553713)
chr8 (225-280)||(12127830-12127885)
chr8 (1-44)||(14791465-14791508)
chr8 (163-213)||(17923070-17923120)
chr8 (4-54)||(20111575-20111625)
chr8 (2-87)||(26544606-26544692)
chr8 (223-280)||(12127043-12127100)
chr8 (163-203)||(6447183-6447223)
chr8 (163-203)||(13575283-13575323)
chr8 (1-44)||(20112288-20112330)
chr8 (175-205)||(26799190-26799220)
chr8 (163-205)||(26886067-26886109)
chr8 (170-203)||(13105095-13105128)
chr8 (162-203)||(13357468-13357509)
chr8 (170-203)||(15079179-15079212)
chr8 (170-203)||(31511972-31512005)
chr8 (171-203)||(1230688-1230720)
chr8 (163-203)||(11708980-11709020)
chr8 (163-203)||(13577070-13577110)
chr8 (162-202)||(14745151-14745191)
chr8 (1-44)||(14790753-14790797)
chr8 (161-205)||(17693265-17693309)
chr8 (171-203)||(33377815-33377847)
chr8 (163-203)||(39821878-39821918)
[»] chr7 (28 HSPs)
chr7 (1-87)||(32390859-32390945)
chr7 (1-44)||(36068118-36068161)
chr7 (2-44)||(3987248-3987289)
chr7 (163-205)||(44454506-44454548)
chr7 (170-203)||(29461848-29461881)
chr7 (1-86)||(32390007-32390091)
chr7 (163-203)||(22267575-22267615)
chr7 (163-203)||(40187663-40187703)
chr7 (162-205)||(21993175-21993218)
chr7 (2-41)||(30480710-30480749)
chr7 (163-201)||(1399156-1399194)
chr7 (163-205)||(4227553-4227595)
chr7 (163-205)||(23198774-23198816)
chr7 (1-87)||(24240647-24240733)
chr7 (1-39)||(34894276-34894314)
chr7 (163-205)||(36341090-36341132)
chr7 (163-205)||(48103699-48103741)
chr7 (163-204)||(19036442-19036483)
chr7 (170-203)||(19599146-19599179)
chr7 (163-204)||(20718153-20718194)
chr7 (170-203)||(31037670-31037703)
chr7 (163-208)||(38728202-38728247)
chr7 (163-203)||(7388066-7388106)
chr7 (163-203)||(8883547-8883587)
chr7 (170-202)||(20115610-20115642)
chr7 (175-203)||(28800054-28800082)
chr7 (170-202)||(31983201-31983233)
chr7 (157-205)||(33897973-33898021)
[»] chr3 (34 HSPs)
chr3 (1-87)||(50381933-50382019)
chr3 (1-44)||(1576567-1576610)
chr3 (1-44)||(1577522-1577565)
chr3 (1-44)||(50837540-50837583)
chr3 (1-44)||(50838270-50838313)
chr3 (1-44)||(54560828-54560871)
chr3 (163-205)||(7738663-7738705)
chr3 (163-203)||(7464518-7464558)
chr3 (170-202)||(42401433-42401465)
chr3 (1-44)||(31799551-31799593)
chr3 (1-44)||(43546447-43546490)
chr3 (164-203)||(46226104-46226143)
chr3 (1-44)||(47470775-47470818)
chr3 (1-44)||(47471487-47471530)
chr3 (163-205)||(8127457-8127499)
chr3 (2-44)||(35942788-35942830)
chr3 (4-42)||(42078646-42078683)
chr3 (161-203)||(48234480-48234522)
chr3 (2-44)||(50382751-50382793)
chr3 (161-203)||(52543719-52543761)
chr3 (175-204)||(1545219-1545248)
chr3 (170-203)||(10922335-10922368)
chr3 (170-203)||(12976629-12976662)
chr3 (162-203)||(18870752-18870793)
chr3 (170-203)||(35126296-35126329)
chr3 (170-203)||(39869834-39869867)
chr3 (163-203)||(1757696-1757736)
chr3 (163-203)||(7557561-7557601)
chr3 (163-203)||(7827502-7827542)
chr3 (163-203)||(7829890-7829930)
chr3 (175-203)||(24145404-24145432)
chr3 (170-202)||(46343889-46343921)
chr3 (163-203)||(46903902-46903942)
chr3 (163-203)||(49787690-49787730)
[»] chr4 (25 HSPs)
chr4 (2-87)||(11147827-11147911)
chr4 (1-44)||(620551-620594)
chr4 (1-44)||(621547-621590)
chr4 (4-54)||(31632464-31632514)
chr4 (223-280)||(23101249-23101305)
chr4 (1-54)||(27455715-27455768)
chr4 (163-203)||(20096297-20096337)
chr4 (159-203)||(33024146-33024190)
chr4 (163-203)||(43722759-43722799)
chr4 (162-205)||(36662394-36662437)
chr4 (2-44)||(11148108-11148149)
chr4 (161-203)||(14577534-14577576)
chr4 (2-44)||(27454998-27455040)
chr4 (170-203)||(34595963-34595996)
chr4 (170-203)||(56204948-56204981)
chr4 (163-203)||(13276123-13276163)
chr4 (175-203)||(14197458-14197486)
chr4 (163-199)||(20043223-20043259)
chr4 (163-203)||(20799421-20799461)
chr4 (175-203)||(21318280-21318308)
chr4 (163-203)||(21465605-21465645)
chr4 (163-203)||(21935006-21935046)
chr4 (225-273)||(39890682-39890730)
chr4 (163-203)||(43034369-43034409)
chr4 (163-203)||(50362166-50362206)
[»] scaffold0102 (1 HSPs)
scaffold0102 (1-44)||(33155-33198)
[»] chr5 (32 HSPs)
chr5 (1-44)||(36430077-36430120)
chr5 (2-44)||(36681862-36681904)
chr5 (1-44)||(5348517-5348560)
chr5 (160-203)||(37054296-37054339)
chr5 (2-87)||(10326812-10326897)
chr5 (163-203)||(28447487-28447527)
chr5 (4-44)||(29500093-29500133)
chr5 (1-44)||(7491332-7491375)
chr5 (164-203)||(17861974-17862013)
chr5 (1-44)||(31808358-31808401)
chr5 (1-44)||(36429363-36429406)
chr5 (163-205)||(3156528-3156570)
chr5 (163-205)||(11637597-11637639)
chr5 (161-203)||(33133631-33133673)
chr5 (1-87)||(33136556-33136642)
chr5 (2-32)||(36681118-36681148)
chr5 (162-203)||(8350663-8350704)
chr5 (170-203)||(11720895-11720928)
chr5 (179-208)||(21209567-21209596)
chr5 (170-203)||(21308970-21309003)
chr5 (170-203)||(21316883-21316916)
chr5 (163-208)||(31561366-31561411)
chr5 (170-203)||(33654749-33654782)
chr5 (174-207)||(36281217-36281250)
chr5 (163-208)||(40782570-40782615)
chr5 (163-203)||(1512849-1512889)
chr5 (1-44)||(5347804-5347848)
chr5 (163-203)||(5485180-5485220)
chr5 (163-203)||(6489001-6489041)
chr5 (163-203)||(15889405-15889445)
chr5 (163-203)||(34436845-34436885)
chr5 (163-203)||(40445977-40446017)
[»] chr1 (32 HSPs)
chr1 (163-203)||(41573296-41573336)
chr1 (1-44)||(27585370-27585413)
chr1 (2-40)||(47445070-47445108)
chr1 (162-203)||(40043184-40043225)
chr1 (4-45)||(45576012-45576052)
chr1 (163-203)||(30678840-30678880)
chr1 (163-214)||(18091197-18091248)
chr1 (225-280)||(22919484-22919539)
chr1 (1-44)||(36475354-36475396)
chr1 (1-44)||(47445786-47445829)
chr1 (163-205)||(22336167-22336209)
chr1 (161-203)||(31890776-31890818)
chr1 (2-44)||(36475982-36476024)
chr1 (163-205)||(43840350-43840392)
chr1 (163-205)||(44801505-44801547)
chr1 (163-205)||(52267758-52267800)
chr1 (170-203)||(2889953-2889986)
chr1 (162-203)||(17139544-17139585)
chr1 (170-203)||(19396218-19396251)
chr1 (170-203)||(29935984-29936017)
chr1 (170-203)||(33153907-33153940)
chr1 (2-86)||(787918-788001)
chr1 (163-203)||(3431324-3431364)
chr1 (163-203)||(5279397-5279437)
chr1 (170-202)||(7574146-7574178)
chr1 (163-203)||(15729424-15729464)
chr1 (161-205)||(21041336-21041380)
chr1 (163-203)||(21400050-21400090)
chr1 (225-273)||(26990844-26990892)
chr1 (170-202)||(34083668-34083700)
chr1 (163-203)||(44243867-44243907)
chr1 (163-203)||(44365975-44366015)
[»] chr6 (16 HSPs)
chr6 (1-44)||(15348208-15348251)
chr6 (1-44)||(17732096-17732139)
chr6 (1-44)||(30710290-30710333)
chr6 (1-44)||(17732827-17732870)
chr6 (1-31)||(2953353-2953383)
chr6 (163-205)||(12735268-12735310)
chr6 (161-203)||(20480658-20480700)
chr6 (163-205)||(21296752-21296794)
chr6 (162-203)||(331913-331954)
chr6 (163-208)||(27928131-27928176)
chr6 (163-208)||(34828300-34828345)
chr6 (1-44)||(15347513-15347557)
chr6 (163-203)||(16390423-16390463)
chr6 (161-205)||(16890473-16890517)
chr6 (163-203)||(21847188-21847228)
chr6 (163-203)||(24373737-24373777)
[»] chr2 (29 HSPs)
chr2 (163-205)||(17779017-17779059)
chr2 (162-203)||(42778612-42778653)
chr2 (163-203)||(3197106-3197146)
chr2 (162-205)||(9842227-9842270)
chr2 (1-44)||(10256501-10256544)
chr2 (170-205)||(41859853-41859888)
chr2 (2-44)||(10255751-10255793)
chr2 (163-205)||(22558971-22559013)
chr2 (170-200)||(27935057-27935087)
chr2 (153-203)||(28644509-28644559)
chr2 (163-205)||(29798542-29798584)
chr2 (2-44)||(33002958-33002999)
chr2 (2-40)||(38018470-38018508)
chr2 (242-280)||(39618337-39618375)
chr2 (242-280)||(45228510-45228547)
chr2 (162-203)||(2256964-2257005)
chr2 (170-203)||(13922659-13922692)
chr2 (163-208)||(14414917-14414962)
chr2 (158-203)||(14463772-14463817)
chr2 (2-31)||(22539136-22539165)
chr2 (170-203)||(31815914-31815947)
chr2 (162-203)||(35820328-35820369)
chr2 (223-280)||(36765853-36765910)
chr2 (223-280)||(39619041-39619098)
chr2 (170-203)||(41555295-41555328)
chr2 (163-203)||(22267507-22267547)
chr2 (175-203)||(29809332-29809360)
chr2 (163-203)||(34977198-34977238)
chr2 (163-203)||(45032687-45032727)
[»] scaffold1160 (1 HSPs)
scaffold1160 (172-205)||(1737-1770)
[»] scaffold0169 (1 HSPs)
scaffold0169 (4-87)||(27371-27453)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-44)||(2028-2071)
[»] scaffold0005 (1 HSPs)
scaffold0005 (161-203)||(239799-239841)
[»] scaffold0050 (1 HSPs)
scaffold0050 (164-205)||(53405-53446)
[»] scaffold0188 (1 HSPs)
scaffold0188 (163-203)||(28140-28180)
[»] scaffold0045 (2 HSPs)
scaffold0045 (163-203)||(63856-63896)
scaffold0045 (163-203)||(71188-71228)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 45105524 - 45105810
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaacccataagacgtggcaattaattgtacacgtggaccaaatgttaa- 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||      
T  45105524 ctgaaattgtcaaacgttagtcaattacccccctccgtttgtttgagcagttaacccctaagacgtggcaattaattgtacacgtggaccaaatgttatg 45105623  T
Q  100 ------cccatgggataattaacnnnnnnnnnnctttcctaaaatctgtgtgactataaaaataaacaagtcctcttgagtttaactcagttggtaggga 193  Q
          | ||| |||||||||||          |||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||    
T  45105624 tcacgtcacataggataattaacttttttttttctttcctaaaatctgtgtgattataaaaataaacaagtcctcgtgagcttagctcagttggtaggga 45105723  T
Q  194 caatgcataaaaataaacaaattccctcgtaaaatttaacacttatacgcaaatacccctcttaaatttaaaatttatgtaacaaat 280  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45105724 taatgcataaaaataaacaaattccctcgtaaaatttaacacttatacgcaaatacccttcttaaatttaaaatttatgtaacaaat 45105810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 7553673 - 7553713
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  7553673 gtcctcgtgagtttaactcagttggtagggacaatgcataa 7553713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 12127885 - 12127830
Alignment:
Q  225 aaatttaacacttatacgcaaatacccctcttaaatttaaaatttatgtaacaaat 280  Q
    |||||||||| ||||| ||||||||||| || |||||||||||||||||| |||||    
T  12127885 aaatttaacatttatatgcaaatacccccctcaaatttaaaatttatgtagcaaat 12127830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14791508 - 14791465
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  14791508 ctgaaattgacaaacgttagtcaattacccccctccgtttgttt 14791465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 17923070 - 17923120
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaaataaacaa 213  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||| ||||    
T  17923070 gtcctcgtgagtttaactcagtttgtatggacaatgcataaaaatatacaa 17923120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 20111575 - 20111625
Alignment:
Q  4 aaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaa 54  Q
    |||||||||||| |||||||||||||||| ||||||||||| ||| |||||    
T  20111575 aaattgtcaaacattagtcaattacccccctccgtttgttttagctgttaa 20111625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 26544606 - 26544692
Alignment:
Q  2 tgaaattgtcaaacgttagtc-aattacccccatccgtttgtttgagcagttaacccataagacgtggcaattaattgtacacgtgg 87  Q
    ||||||||||||||||||||| ||||| |||| || ||||||||  ||  ||||  |||| |||||||||||||| |||||||||||    
T  26544606 tgaaattgtcaaacgttagtcaaattaaccccctctgtttgttttggctattaaatcatatgacgtggcaattaactgtacacgtgg 26544692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 12127043 - 12127100
Alignment:
Q  223 taaaatttaacacttatacgcaaatacccctcttaaatttaaaatttatgtaacaaat 280  Q
    |||||||||||| ||||  ||||||||||| || |||||||||||||||||| |||||    
T  12127043 taaaatttaacatttatgtgcaaatacccccctcaaatttaaaatttatgtagcaaat 12127100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 6447183 - 6447223
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  6447183 gtcctcgtgagtttaactcagttggtatggacaatgcataa 6447223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 13575283 - 13575323
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||| |||||||||||||||||||||||||    
T  13575283 gtcctcgtgagtttagctcagttggtagggacaatgcataa 13575323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20112330 - 20112288
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||| ||||||||||||||||||||||| |||||||||||    
T  20112330 ctgaaattatcaaacgttagtcaattaccccc-tccgtttgttt 20112288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 26799190 - 26799220
Alignment:
Q  175 ttaactcagttggtagggacaatgcataaaa 205  Q
    |||||||||||||||||||||||||||||||    
T  26799190 ttaactcagttggtagggacaatgcataaaa 26799220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 26886109 - 26886067
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| ||||||||||| |||||||| |||||||||||||||    
T  26886109 gtcctcgtgagtttaacttagttggtatggacaatgcataaaa 26886067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 13105095 - 13105128
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||| |||||||||||||||||||||||||||||    
T  13105095 tgagattaactcagttggtagggacaatgcataa 13105128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 13357509 - 13357468
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||| |||| ||||||||||||||| |||||||||||||    
T  13357509 agtcctcgtgagcttaactcagttggtatggacaatgcataa 13357468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 15079212 - 15079179
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||| |||||||||||||||||||||||||||||    
T  15079212 tgagcttaactcagttggtagggacaatgcataa 15079179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 31511972 - 31512005
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||| ||||||||||||||||||||||||||||    
T  31511972 tgagtctaactcagttggtagggacaatgcataa 31512005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 1230720 - 1230688
Alignment:
Q  171 gagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||||||||||||||||| |||||||||||    
T  1230720 gagtttaactcagttggtaggaacaatgcataa 1230688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 11708980 - 11709020
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  11708980 gtcctcgtgagcttagctcagttggtagggacaatgcataa 11709020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 13577070 - 13577110
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||||||||||||||| |||||||||||||    
T  13577070 gtcctcctgagcttaactcagttggtatggacaatgcataa 13577110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 14745151 - 14745191
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcata 202  Q
    ||||||| ||||||||| |||||||||| ||||||||||||    
T  14745151 agtcctcgtgagtttaaatcagttggtaaggacaatgcata 14745191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14790753 - 14790797
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaatta-cccccatccgtttgttt 44  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||    
T  14790753 ctgaaattatcaaacgttagtcaattaccccccttccgtttgttt 14790797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 17693265 - 17693309
Alignment:
Q  161 aagtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||||| |||| |||||||||||||| ||||||| ||||||||    
T  17693265 aagtcctcgtgagcttaactcagttggttgggacaacgcataaaa 17693309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 33377815 - 33377847
Alignment:
Q  171 gagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||||||||||| ||||    
T  33377815 gagtttaactcagttggtagggacaatgaataa 33377847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 39821878 - 39821918
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  39821878 gtcctcgtgagcttagctcagttggtagggacaatgcataa 39821918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 32390945 - 32390859
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaacccataagacgtggcaattaattgtacacgtgg 87  Q
    |||||||| ||||||||||||||||||||||| |||||||||||   | ||||| ||||| |||||||||| ||| |||||||||||    
T  32390945 ctgaaattatcaaacgttagtcaattacccccctccgtttgttttgactgttaaaccatatgacgtggcaagtaaatgtacacgtgg 32390859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36068161 - 36068118
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  36068161 ctgaaattgtcaaatgttagtcaattacccccctccgtttgttt 36068118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 3987289 - 3987248
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  3987289 tgaaattgtcaaacgttagtcaattaccccc-tccgtttgttt 3987248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 44454506 - 44454548
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  44454506 gtcctcgtgagcttaactcagttggtagggacaatgcataaaa 44454548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 29461881 - 29461848
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||||||||||||||||||||||||||||||    
T  29461881 tgagtttaactcagttggtagggacaatgcataa 29461848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32390007 - 32390091
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaacccataagacgtggcaattaattgtacacgtg 86  Q
    ||||||||||||||||||||||||||| |||| ||| ||| |||  |  ||||| ||||| |||||||||| ||| ||||||||||    
T  32390007 ctgaaattgtcaaacgttagtcaattatcccc-tccatttattttggttgttaaaccatatgacgtggcaagtaaatgtacacgtg 32390091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 22267575 - 22267615
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  22267575 gtcctcgtgagtttaactcagttggtagagacaatgcataa 22267615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 40187703 - 40187663
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  40187703 gtcctcatgagcttaactcagttggtagggacaatgcataa 40187663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 21993175 - 21993218
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||    
T  21993175 agtcctcgtgagcttaactcagttggtatggacaatgcataaaa 21993218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 30480749 - 30480710
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttg 41  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  30480749 tgaaattgtcaaacgttagtcaattatccccctccgtttg 30480710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 1399156 - 1399194
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcat 201  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  1399156 gtcctcgtgagtttaactcagttggtatggacaatgcat 1399194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 4227595 - 4227553
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||| ||||||||||||||| |||||||||||||||    
T  4227595 gtcctcgtgagcttaactcagttggtatggacaatgcataaaa 4227553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 23198816 - 23198774
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||||||||||||||||||| | |||||||||||||    
T  23198816 gtcctcgtgagtttaactcagttggtatgaacaatgcataaaa 23198774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 24240647 - 24240733
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaacccataagacgtggcaattaattgtacacgtgg 87  Q
    |||||||||| ||| ||||||||||||||||| || || |||||  || ||||  || |  |||||||||||||| |||||||||||    
T  24240647 ctgaaattgttaaatgttagtcaattacccccctctgtctgttttggctgttacaccctgtgacgtggcaattaactgtacacgtgg 24240733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34894276 - 34894314
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtt 39  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  34894276 ctgaaattgtcaaacgtcagtcaaatacccccatccgtt 34894314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 36341132 - 36341090
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    ||||||||||| ||||||||||||||| | |||||||||||||    
T  36341132 gtcctcttgagcttaactcagttggtatgaacaatgcataaaa 36341090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 48103741 - 48103699
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||| |||||||||||||| ||||||||||||||||    
T  48103741 gtcctcgtgagcttaactcagttggttgggacaatgcataaaa 48103699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 19036483 - 19036442
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaa 204  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  19036483 gtcctcatgagtttaactcagttgataggaacaatgcataaa 19036442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 19599146 - 19599179
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||| |||||||||||||    
T  19599146 tgagtttaactcagttggtatggacaatgcataa 19599179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 20718153 - 20718194
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaa 204  Q
    |||||| ||||||||||||||||| |||| ||||||||||||    
T  20718153 gtcctcatgagtttaactcagttgataggaacaatgcataaa 20718194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 31037703 - 31037670
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||||| |||||||||||    
T  31037703 tgagtttaactcagttggtaggaacaatgcataa 31037670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 38728202 - 38728247
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaaata 208  Q
    |||||| |||| ||| ||||||||||| ||||||||||||||||||    
T  38728202 gtcctcgtgagcttagctcagttggtatggacaatgcataaaaata 38728247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 7388106 - 7388066
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| |||||||||||||| ||||||||||||||    
T  7388106 gtcctcgtgagcttaactcagttggttgggacaatgcataa 7388066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 8883547 - 8883587
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||||||||||||||| |||||||||||||    
T  8883547 gtcctcgtgagcttaactcagttggtatggacaatgcataa 8883587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 20115642 - 20115610
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcata 202  Q
    |||||||| ||||||||||||||||||||||||    
T  20115642 tgagtttagctcagttggtagggacaatgcata 20115610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 28800082 - 28800054
Alignment:
Q  175 ttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||||||||||||    
T  28800082 ttaactcagttggtagggacaatgcataa 28800054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 31983201 - 31983233
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcata 202  Q
    |||||||||||||||| ||||||||||||||||    
T  31983201 tgagtttaactcagttagtagggacaatgcata 31983233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 33898021 - 33897973
Alignment:
Q  157 aaacaagtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||||||| | ||| |||||||||||||||| ||||||| |||||||    
T  33898021 aaacaagtccacgtgaatttaactcagttggtaaggacaatacataaaa 33897973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 50381933 - 50382019
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaacccataagacgtggcaattaattgtacacgtgg 87  Q
    |||||||||||||||||||||||||||||||| || ||||||||  || ||||| ||||| |||||||||| ||| |||||| ||||    
T  50381933 ctgaaattgtcaaacgttagtcaattacccccctctgtttgttttggctgttaaaccatatgacgtggcaaataaatgtacatgtgg 50382019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1576567 - 1576610
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  1576567 ctgaaattgacaaacgttagtcaattacccccctccgtttgttt 1576610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1577565 - 1577522
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  1577565 ctgaaattgacaaacgttagtcaattacccccctccgtttgttt 1577522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 50837540 - 50837583
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  50837540 ctgaaattgacaaacgttagtcaattacccccctccgtttgttt 50837583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 50838313 - 50838270
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||| ||||||||||||||||||||||| |||||||||||    
T  50838313 ctgaaattatcaaacgttagtcaattacccccctccgtttgttt 50838270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 54560871 - 54560828
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  54560871 ctgaaattgacaaacgttagtcaattacccccctccgtttgttt 54560828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 7738663 - 7738705
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  7738663 gtcctcgtgagcttaactcagttggtagggacaatgcataaaa 7738705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 7464558 - 7464518
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  7464558 gtcctcgtgagcttaactcagttggtagggacaatgcataa 7464518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 42401433 - 42401465
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcata 202  Q
    |||||||||||||||||||||||||||||||||    
T  42401433 tgagtttaactcagttggtagggacaatgcata 42401465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31799551 - 31799593
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  31799551 ctgaaattgtcaaatgttagtcaattaccccc-tccgtttgttt 31799593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43546447 - 43546490
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||| |||||||| |||||||||||||| |||||||||||    
T  43546447 ctgaaattatcaaacgtcagtcaattacccccctccgtttgttt 43546490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 46226143 - 46226104
Alignment:
Q  164 tcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  46226143 tcctcgtgagtttaactcaattggtagggacaatgcataa 46226104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 47470775 - 47470818
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||| |||||||| |||||||||||||| |||||||||||    
T  47470775 ctgaaattatcaaacgtcagtcaattacccccctccgtttgttt 47470818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 47471530 - 47471487
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| |||||||||||||||||||||| || ||||||||    
T  47471530 ctgaaattgccaaacgttagtcaattacccccctctgtttgttt 47471487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 8127457 - 8127499
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||| ||||||||||||||| |||||||||||||||    
T  8127457 gtcctcgtgagcttaactcagttggtaaggacaatgcataaaa 8127499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 35942830 - 35942788
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||    
T  35942830 tgaaattgttaaacgttagtcaattacccccctccatttgttt 35942788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 42078683 - 42078646
Alignment:
Q  4 aaattgtcaaacgttagtcaattacccccatccgtttgt 42  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  42078683 aaattgtcaaacgttagtcaattaccccc-tccgtttgt 42078646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 48234522 - 48234480
Alignment:
Q  161 aagtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  48234522 aagtcctcgagagtttaactcagttggtggggacaatgcataa 48234480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 50382793 - 50382751
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||| |||||||||||||||||||||||| | |||||||||    
T  50382793 tgaaatggtcaaacgttagtcaattaccccccttcgtttgttt 50382751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 52543761 - 52543719
Alignment:
Q  161 aagtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||||||||| |||||| |||||||||| |||||||||||    
T  52543761 aagtcctcttgagcttaacttagttggtaggaacaatgcataa 52543719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 1545248 - 1545219
Alignment:
Q  175 ttaactcagttggtagggacaatgcataaa 204  Q
    ||||||||||||||||||||||||||||||    
T  1545248 ttaactcagttggtagggacaatgcataaa 1545219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 10922368 - 10922335
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||| |||||||||||||||||||||||||||||    
T  10922368 tgagcttaactcagttggtagggacaatgcataa 10922335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 12976662 - 12976629
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||||||||||||| ||||||||||||||||    
T  12976662 tgagtttaactcagttgatagggacaatgcataa 12976629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 18870793 - 18870752
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||| |||| ||| |||||||||||||||||||||||||    
T  18870793 agtcctcgtgagcttagctcagttggtagggacaatgcataa 18870752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 35126329 - 35126296
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||||||| |||||||||    
T  35126329 tgagtttaactcagttggtagggataatgcataa 35126296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 39869867 - 39869834
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||| |||||||||||||    
T  39869867 tgagtttaactcagttggtaaggacaatgcataa 39869834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 1757736 - 1757696
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||||||||||||||||| |||||||||||    
T  1757736 gtcctcgtgagcttaactcagttggtaggaacaatgcataa 1757696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 7557601 - 7557561
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||||||||||||||| |||||||||||||    
T  7557601 gtcctcgtgagcttaactcagttggtatggacaatgcataa 7557561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 7827502 - 7827542
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| ||||||||||||||||| || |||||||||||||    
T  7827502 gtcctcgtgagtttaactcagttgatatggacaatgcataa 7827542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 7829890 - 7829930
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| ||||||||||||||||| || |||||||||||||    
T  7829890 gtcctcgtgagtttaactcagttgatatggacaatgcataa 7829930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 24145404 - 24145432
Alignment:
Q  175 ttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||||||||||||    
T  24145404 ttaactcagttggtagggacaatgcataa 24145432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 46343921 - 46343889
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcata 202  Q
    |||||||||||||||||||||||||||| ||||    
T  46343921 tgagtttaactcagttggtagggacaatacata 46343889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 46903902 - 46903942
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||||||||||||||| |||||||||||||    
T  46903902 gtcctcgtgagattaactcagttggtatggacaatgcataa 46903942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 49787730 - 49787690
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  49787730 gtcctcgtgagcttaactcagttagtagggacaatgcataa 49787690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 11147827 - 11147911
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaacccataagacgtggcaattaattgtacacgtgg 87  Q
    ||||||||||||||||||||||||||||||| |||||||||||  || ||||| |||| |||| |||||| ||| |||||| ||||    
T  11147827 tgaaattgtcaaacgttagtcaattacccccctccgtttgttttggctgttaaaccat-agacatggcaagtaaatgtacatgtgg 11147911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 620551 - 620594
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  620551 ctgaaattgacaaacgttagtcaattacccccctccgtttgttt 620594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 621590 - 621547
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  621590 ctgaaattgacaaacgttagtcaattacccccctccgtttgttt 621547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 31632464 - 31632514
Alignment:
Q  4 aaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaa 54  Q
    ||||||||||||||||||||||| ||||| |||||||||||| || |||||    
T  31632464 aaattgtcaaacgttagtcaattgcccccctccgtttgtttgggctgttaa 31632514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 23101249 - 23101305
Alignment:
Q  223 taaaatttaacacttatacgcaaatacccctcttaaatttaaaatttatgtaacaaat 280  Q
    |||||||||||| ||||  ||||||||||| ||||||||||||||||||||| |||||    
T  23101249 taaaatttaacatttatgtgcaaatacccc-cttaaatttaaaatttatgtagcaaat 23101305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27455768 - 27455715
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaa 54  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||  ||||||||    
T  27455768 ctgaaattgccaaatgttagtcaattacccccctccgtttgttttggcagttaa 27455715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 20096337 - 20096297
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||||||||||||||||||| |||||||||    
T  20096337 gtcctcgtgagtttaactcagttggtagggataatgcataa 20096297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 33024146 - 33024190
Alignment:
Q  159 acaagtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||    
T  33024146 acaagtcctcgtgagtttaacttagttggtatggacaatgcataa 33024190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 43722759 - 43722799
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  43722759 gtcctcgtgagtttaactcagttggtatggacaatgcataa 43722799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 36662437 - 36662394
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||    
T  36662437 agtcctcgtgagtttaactcagttggtatagacaatgcataaaa 36662394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 11148149 - 11148108
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  11148149 tgaaattgtcaaatgttagtcaattaccccc-tccgtttgttt 11148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 14577576 - 14577534
Alignment:
Q  161 aagtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||| |||||||| ||||||||||| |||||||||||||    
T  14577576 aagtcctcgtgagtttagctcagttggtaaggacaatgcataa 14577534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 27454998 - 27455040
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||| |||||||| |||||||||||||| |||||||||||    
T  27454998 tgaaattatcaaacgtcagtcaattacccccctccgtttgttt 27455040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 34595996 - 34595963
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||| |||||||||||||    
T  34595996 tgagtttaactcagttggtaaggacaatgcataa 34595963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 56204948 - 56204981
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||| |||||||||||||    
T  56204948 tgagtttaactcagttggtaaggacaatgcataa 56204981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 13276123 - 13276163
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| |||||||| ||||||||||||||||||||    
T  13276123 gtcctcgtgagcttaactcaattggtagggacaatgcataa 13276163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 14197486 - 14197458
Alignment:
Q  175 ttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||||||||||||    
T  14197486 ttaactcagttggtagggacaatgcataa 14197458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 20043259 - 20043223
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgc 199  Q
    |||||| |||| |||||||||||||||||||||||||    
T  20043259 gtcctcgtgagcttaactcagttggtagggacaatgc 20043223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 20799461 - 20799421
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  20799461 gtcctcgtgagcttagctcagttggtagggacaatgcataa 20799421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 21318308 - 21318280
Alignment:
Q  175 ttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||||||||||||    
T  21318308 ttaactcagttggtagggacaatgcataa 21318280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 21465605 - 21465645
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||||||||||| ||| |||||||||||||    
T  21465605 gtcctcgtgagtttaactcagttagtaaggacaatgcataa 21465645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 21935006 - 21935046
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| ||||||||||||||||||||  ||||||||||||    
T  21935006 gtcctcgtgagtttaactcagttggtatagacaatgcataa 21935046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 39890682 - 39890730
Alignment:
Q  225 aaatttaacacttatacgcaaatacccctcttaaatttaaaatttatgt 273  Q
    |||||||| |||||| |||||||| ||| || |||||||||||||||||    
T  39890682 aaatttaaaacttatgcgcaaatatcccgctcaaatttaaaatttatgt 39890730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 43034409 - 43034369
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||||||||||||||| |||||||||||||    
T  43034409 gtcctcgtgagcttaactcagttggtatggacaatgcataa 43034369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 50362206 - 50362166
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  50362206 gtcctcgtgagcttagctcagttggtagggacaatgcataa 50362166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33198 - 33155
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  33198 ctgaaattgtcaaacgttagtcaattacccccctccgtttgttt 33155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36430120 - 36430077
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  36430120 ctgaaattgccaaacgttagtcaattacccccatccgtttgttt 36430077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 36681904 - 36681862
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  36681904 tgaaattgtcaaacgttagtcaattacccccctccgtttgttt 36681862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5348560 - 5348517
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  5348560 ctgaaattgacaaacgttagtcaattacccccctccgtttgttt 5348517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 37054339 - 37054296
Alignment:
Q  160 caagtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||||| |||||||| |||||||||||||||||||||||||    
T  37054339 caagtcctcatgagtttagctcagttggtagggacaatgcataa 37054296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 10326897 - 10326812
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaacccataagacgtggcaattaattgtacacgtgg 87  Q
    |||||||||||||| |||||||| ||||||| ||||| |||||  || |||||||  || ||||||||| |||| || ||||||||    
T  10326897 tgaaattgtcaaacattagtcaactacccccctccgtctgttttggctgttaacctctatgacgtggcagttaaatgcacacgtgg 10326812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 28447487 - 28447527
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  28447487 gtcctcgtgagtttaactcagttagtagggacaatgcataa 28447527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 29500093 - 29500133
Alignment:
Q  4 aaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  29500093 aaattgtcaaacgttagtcaattacccctctccgtttgttt 29500133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 7491332 - 7491375
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||||| ||||||||||||||||||||| | |||||||||    
T  7491332 ctgaaattgtgaaacgttagtcaattaccccccttcgtttgttt 7491375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 17861974 - 17862013
Alignment:
Q  164 tcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  17861974 tcctcgtgagtttagctcagttggtagggacaatgcataa 17862013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31808358 - 31808401
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||||| ||||||||||||||||||||| || ||||||||    
T  31808358 ctgaaattgttaaacgttagtcaattacccccctcagtttgttt 31808401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36429363 - 36429406
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||| |||||||| |||||||||||||| |||||||||||    
T  36429363 ctgaaattatcaaacgtcagtcaattacccccctccgtttgttt 36429406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 3156528 - 3156570
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||||||||||||||||||| ||| |||||||||||    
T  3156528 gtcctcgtgagtttaactcagttggtatggataatgcataaaa 3156570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 11637639 - 11637597
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||| ||||||||||||||| |||||||||||||||    
T  11637639 gtcctcgtgagcttaactcagttggtatggacaatgcataaaa 11637597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 33133631 - 33133673
Alignment:
Q  161 aagtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||| |||| ||| |||||||||||||||||||||||||    
T  33133631 aagtcctcgtgagcttagctcagttggtagggacaatgcataa 33133673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33136642 - 33136556
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaacccataagacgtggcaattaattgtacacgtgg 87  Q
    |||||||||| ||||||||||||||||||||| ||| | |||||  || ||||  |  || ||||||||| |||| |||||||||||    
T  33136642 ctgaaattgttaaacgttagtcaattacccccctccatctgttttggctgttacactctatgacgtggcagttaactgtacacgtgg 33136556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 36681118 - 36681148
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattaccccc 32  Q
    |||||||||||||||||||||||||||||||    
T  36681118 tgaaattgtcaaacgttagtcaattaccccc 36681148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 8350663 - 8350704
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||| |||||||||||||||||| | |||||||||||||    
T  8350663 agtcctcgtgagtttaactcagttggcatggacaatgcataa 8350704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 11720895 - 11720928
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||| |||||||||||||||||||||||||||||    
T  11720895 tgagcttaactcagttggtagggacaatgcataa 11720928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 208
Target Start/End: Original strand, 21209567 - 21209596
Alignment:
Q  179 ctcagttggtagggacaatgcataaaaata 208  Q
    ||||||||||||||||||||||||||||||    
T  21209567 ctcagttggtagggacaatgcataaaaata 21209596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 21308970 - 21309003
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||| |||||||||||||    
T  21308970 tgagtttaactcagttggtaaggacaatgcataa 21309003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 21316883 - 21316916
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||| |||||||||||||    
T  21316883 tgagtttaactcagttggtaaggacaatgcataa 21316916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 31561411 - 31561366
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaaata 208  Q
    |||||| |||| ||||||||||||||| ||||||||||||| ||||    
T  31561411 gtcctcgtgagcttaactcagttggtatggacaatgcataataata 31561366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 33654749 - 33654782
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||| |||||||||||||||||||||||||||||    
T  33654749 tgagcttaactcagttggtagggacaatgcataa 33654782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 36281250 - 36281217
Alignment:
Q  174 tttaactcagttggtagggacaatgcataaaaat 207  Q
    |||||||||||||||| |||||||||||||||||    
T  36281250 tttaactcagttggtatggacaatgcataaaaat 36281217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 40782615 - 40782570
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaaata 208  Q
    |||||| |||||||||||||||| ||| ||||||||||||| ||||    
T  40782615 gtcctcgtgagtttaactcagtttgtatggacaatgcataataata 40782570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 1512849 - 1512889
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||||||||||| |||||||||||||||||    
T  1512849 gtcctcgtgagcttaactcagttagtagggacaatgcataa 1512889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5347804 - 5347848
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaatta-cccccatccgtttgttt 44  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||    
T  5347804 ctgaaattatcaaacgttagtcaattaccccccttccgtttgttt 5347848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 5485180 - 5485220
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  5485180 gtcctcgtgagcttagctcagttggtagggacaatgcataa 5485220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 6489001 - 6489041
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  6489001 gtcctcgtgagcttagctcagttggtagggacaatgcataa 6489041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 15889405 - 15889445
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  15889405 gtcctcgtgagcttagctcagttggtagggacaatgcataa 15889445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 34436845 - 34436885
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  34436845 gtcctcgtgagcttagctcagttggtagggacaatgcataa 34436885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 40445977 - 40446017
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| ||||||||||||||||| || |||||||||||||    
T  40445977 gtcctcgtgagtttaactcagttgataaggacaatgcataa 40446017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 41573336 - 41573296
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  41573336 gtcctcgtgagtttaactcagttggtagggacaatgcataa 41573296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27585370 - 27585413
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  27585370 ctgaaattgtcaaacgttagtcgattacccccattcgtttgttt 27585413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 47445070 - 47445108
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgttt 40  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  47445070 tgaaattgtcaaacgttagtcaattacccccctccgttt 47445108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 40043225 - 40043184
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  40043225 agtcctcctgagtttaactcagttggtagggacaatgtataa 40043184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 45576012 - 45576052
Alignment:
Q  4 aaattgtcaaacgttagtcaattacccccatccgtttgtttg 45  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  45576012 aaattgtcaaacgttagtcaattaccccc-tccgtttgtttg 45576052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 30678880 - 30678840
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  30678880 gtcctcgtgagcttaactcagttggtagggacaatgcataa 30678840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 18091197 - 18091248
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaaataaacaaa 214  Q
    |||||| |||| |||||||||||| ||||||||||||||||| ||| |||||    
T  18091197 gtcctcgtgagcttaactcagttgatagggacaatgcataaatatatacaaa 18091248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 22919484 - 22919539
Alignment:
Q  225 aaatttaacacttatacgcaaatacccctcttaaatttaaaatttatgtaacaaat 280  Q
    |||||||||||||||| ||||| ||||  || ||||||| ||||||||||||||||    
T  22919484 aaatttaacacttatatgcaaacacccacctcaaatttataatttatgtaacaaat 22919539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36475354 - 36475396
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  36475354 ctgaaattgttaaacgttagtcaattaccccc-tccgtttgttt 36475396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 47445829 - 47445786
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||    
T  47445829 ctgaaattatcaaacgttagtcaattacccccctccatttgttt 47445786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 22336209 - 22336167
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||    
T  22336209 gtcctcttgagcttaactcagttggtatggacaatggataaaa 22336167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 31890818 - 31890776
Alignment:
Q  161 aagtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||| |||||||| ||||||||||| |||||||||||||    
T  31890818 aagtcctcgtgagtttagctcagttggtaaggacaatgcataa 31890776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 36476024 - 36475982
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||    
T  36476024 tgaaattgttaaacgttagtcaattacccccctccatttgttt 36475982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 43840392 - 43840350
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| ||||||||||||||||| || |||||||||||||||    
T  43840392 gtcctcgtgagtttaactcagttgatatggacaatgcataaaa 43840350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 44801505 - 44801547
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||||||||||||||| |||||||| ||||| |||||||||    
T  44801505 gtcctcttgagtttaacttagttggtatggacactgcataaaa 44801547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 52267758 - 52267800
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||| ||||||||||||||| |||||||||||||||    
T  52267758 gtcctcgtgagcttaactcagttggtaaggacaatgcataaaa 52267800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 2889986 - 2889953
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||| |||||||||||||||||||||||||||||    
T  2889986 tgagcttaactcagttggtagggacaatgcataa 2889953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 17139585 - 17139544
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||| |||| ||| |||||||||||||||||||||||||    
T  17139585 agtcctcgtgagcttagctcagttggtagggacaatgcataa 17139544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 19396251 - 19396218
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||||||| |||||||||    
T  19396251 tgagtttaactcagttggtagggataatgcataa 19396218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 29935984 - 29936017
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||| |||||||||||||    
T  29935984 tgagtttaactcagttggtatggacaatgcataa 29936017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 33153940 - 33153907
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||| |||||||||||||||||||||||||||||    
T  33153940 tgagcttaactcagttggtagggacaatgcataa 33153907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 788001 - 787918
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaacccataagacgtggcaattaattgtacacgtg 86  Q
    ||||||| |||| |||||||||||||||||| ||| |||||||| || ||||| || || ||| ||||  |||||| ||||||||    
T  788001 tgaaattttcaaccgttagtcaattaccccc-tccatttgtttgggctgttaaaccttatgacatggcggttaattctacacgtg 787918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 3431324 - 3431364
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||||||||||||||||| | |||||||||    
T  3431324 gtcctcgtgagtttaactcagttggtaggaagaatgcataa 3431364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 5279437 - 5279397
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| ||||||||||||||| |||| |||||||||||||    
T  5279437 gtcctcgtgagtttaactcagtcggtatggacaatgcataa 5279397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 7574178 - 7574146
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcata 202  Q
    |||||||||||||||||||| ||||||||||||    
T  7574178 tgagtttaactcagttggtaaggacaatgcata 7574146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 15729424 - 15729464
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| |||||||||||||||| ||||||||||||    
T  15729424 gtcctcgtgagcttaactcagttggtagagacaatgcataa 15729464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 21041336 - 21041380
Alignment:
Q  161 aagtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||| ||| |||||||| ||||||||||| |||||||||||||||    
T  21041336 aagttctcgtgagtttacctcagttggtatggacaatgcataaaa 21041380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 21400090 - 21400050
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  21400090 gtcctcgtgagcttagctcagttggtagggacaatgcataa 21400050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 26990892 - 26990844
Alignment:
Q  225 aaatttaacacttatacgcaaatacccctcttaaatttaaaatttatgt 273  Q
    |||||||||||||||  ||||||||||| || |||||||||| ||||||    
T  26990892 aaatttaacacttatgtgcaaatacccccctcaaatttaaaacttatgt 26990844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 34083700 - 34083668
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcata 202  Q
    |||| ||||||||||||||||||||||||||||    
T  34083700 tgagcttaactcagttggtagggacaatgcata 34083668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 44243867 - 44243907
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||| ||||||||||||| |||||||||||    
T  44243867 gtcctcgtgagtttagctcagttggtaggaacaatgcataa 44243907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 44366015 - 44365975
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||||||||||||||||| ||||| |||||    
T  44366015 gtcctcgtgagtttaactcagttggtaggaacaatacataa 44365975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15348251 - 15348208
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  15348251 ctgaaattgacaaacgttagtcaattacccccttccgtttgttt 15348208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 17732096 - 17732139
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  17732096 ctgaaattgacaaacgttagtcaattacccccctccgtttgttt 17732139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30710333 - 30710290
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||    
T  30710333 ctgaaattgccaaacgttagtcaattacccccatctgtttgttt 30710290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 17732870 - 17732827
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||    
T  17732870 ctgaaattatcaaacgttagccaattacccccctccgtttgttt 17732827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 2953353 - 2953383
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccc 31  Q
    |||||||||||||||||||||||||||||||    
T  2953353 ctgaaattgtcaaacgttagtcaattacccc 2953383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 12735310 - 12735268
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||| |||||||||||||| ||||||||||||||||    
T  12735310 gtcctcgtgagcttaactcagttggttgggacaatgcataaaa 12735268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 20480700 - 20480658
Alignment:
Q  161 aagtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||| |||| ||||||||||||||||| |||||||||||    
T  20480700 aagtcctcgtgagcttaactcagttggtaggaacaatgcataa 20480658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 21296752 - 21296794
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||||||| |||||||||| ||||||||||||||||    
T  21296752 gtcctcgtgagtttagctcagttggttgggacaatgcataaaa 21296794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 331954 - 331913
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||| |||| |||||||||||||||| ||||||||||||    
T  331954 agtcctcgtgagcttaactcagttggtagagacaatgcataa 331913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 27928176 - 27928131
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaaata 208  Q
    |||||| ||||||||||||||||||||| |||||| ||||| ||||    
T  27928176 gtcctcgtgagtttaactcagttggtagagacaatacataataata 27928131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 34828300 - 34828345
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaaata 208  Q
    |||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  34828300 gtcctcgtgagtttagctcagttggtatggacaatgcataataata 34828345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15347513 - 15347557
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaatta-cccccatccgtttgttt 44  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||    
T  15347513 ctgaaattatcaaacgttagtcaattaccccccttccgtttgttt 15347557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 16390423 - 16390463
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  16390423 gtcctcgtgagcttacctcagttggtagggacaatgcataa 16390463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 16890517 - 16890473
Alignment:
Q  161 aagtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||||| |||| |||||| |||||||| |||||||||||||||    
T  16890517 aagtcctcgtgagcttaacttagttggtatggacaatgcataaaa 16890473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 21847188 - 21847228
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||||||| ||| ||||||||||||||||||| |||||    
T  21847188 gtcctcttgagcttagctcagttggtagggacaatacataa 21847228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 24373777 - 24373737
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| ||||||||||||| ||||||| ||||||||||||    
T  24373777 gtcctcgtgagtttaactcaattggtagagacaatgcataa 24373737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 17779059 - 17779017
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  17779059 gtcctcgtgagtttaactcagttggtagagacaatgcataaaa 17779017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 42778612 - 42778653
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  42778612 agtcctcatgagtttaactcagttggtaaggacaatgcataa 42778653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 3197146 - 3197106
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||| |||||||||||||||||||||||||    
T  3197146 gtcctcgtgagtttagctcagttggtagggacaatgcataa 3197106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 9842270 - 9842227
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    ||||||| |||| ||| |||||||||||||||||||||||||||    
T  9842270 agtcctcgtgagcttagctcagttggtagggacaatgcataaaa 9842227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10256544 - 10256501
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||||| |||||||||||||||||||||  |||||||||||    
T  10256544 ctgaaattgccaaacgttagtcaattaccccgctccgtttgttt 10256501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 41859853 - 41859888
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||||||||||||||||| |||||||||||||||    
T  41859853 tgagtttaactcagttggtatggacaatgcataaaa 41859888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 10255751 - 10255793
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    ||||||| |||||||| |||||||||||||| |||||||||||    
T  10255751 tgaaattatcaaacgtcagtcaattacccccctccgtttgttt 10255793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 22558971 - 22559013
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||||||||||||||||||  |||||||||||||||    
T  22558971 gtcctcgtgagtttaactcagttggtttggacaatgcataaaa 22559013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 200
Target Start/End: Original strand, 27935057 - 27935087
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgca 200  Q
    |||||||||||||||||||||||||||||||    
T  27935057 tgagtttaactcagttggtagggacaatgca 27935087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 28644509 - 28644559
Alignment:
Q  153 aaataaacaagtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||| | |||||  |||| |||||||||||||||||||||||||||||    
T  28644509 aaataaagatgtccttgtgagcttaactcagttggtagggacaatgcataa 28644559  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 29798584 - 29798542
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    |||||| |||| ||||||||||||||| |||||||||||||||    
T  29798584 gtcctcgtgagcttaactcagttggtatggacaatgcataaaa 29798542  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 33002958 - 33002999
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  33002958 tgaaattgtcaaacgttagttaattaccccc-tccgtttgttt 33002999  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 38018470 - 38018508
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccccatccgttt 40  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  38018470 tgaaatcgtcaaacgttagtcaattacccccttccgttt 38018508  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 39618337 - 39618375
Alignment:
Q  242 gcaaatacccctcttaaatttaaaatttatgtaacaaat 280  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  39618337 gcaaatacccctctcaaatttaaaatttatgtagcaaat 39618375  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 45228547 - 45228510
Alignment:
Q  242 gcaaatacccctcttaaatttaaaatttatgtaacaaat 280  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  45228547 gcaaatacccc-cttaaatttaaaatttatgtaacaaat 45228510  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 2256964 - 2257005
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||| |||| ||||||||||||||| |||||||||||||    
T  2256964 agtcctcgtgagcttaactcagttggtatggacaatgcataa 2257005  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 13922692 - 13922659
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||| |||||||||||||||||||||||||||||    
T  13922692 tgagcttaactcagttggtagggacaatgcataa 13922659  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 14414962 - 14414917
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataaaaata 208  Q
    |||||| |||| ||||||||||||||| ||||||||||||| ||||    
T  14414962 gtcctcgtgagcttaactcagttggtatggacaatgcataataata 14414917  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 14463817 - 14463772
Alignment:
Q  158 aacaagtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||||||| |||| ||| ||||||||||||||| |||||||||    
T  14463817 aacaagtcctcgtgagcttacctcagttggtagggaaaatgcataa 14463772  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 22539165 - 22539136
Alignment:
Q  2 tgaaattgtcaaacgttagtcaattacccc 31  Q
    ||||||||||||||||||||||||||||||    
T  22539165 tgaaattgtcaaacgttagtcaattacccc 22539136  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 31815947 - 31815914
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||| |||||||||||||||||||||||||||||    
T  31815947 tgagcttaactcagttggtagggacaatgcataa 31815914  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 35820369 - 35820328
Alignment:
Q  162 agtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    ||||||| |||| ||| |||||||||||||||||||||||||    
T  35820369 agtcctcgtgagcttagctcagttggtagggacaatgcataa 35820328  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 36765910 - 36765853
Alignment:
Q  223 taaaatttaacacttatacgcaaatacccctcttaaatttaaaatttatgtaacaaat 280  Q
    |||||||||||| ||||  ||||||| ||| || |||||||||||||||||| |||||    
T  36765910 taaaatttaacatttatgtgcaaatatccccctcaaatttaaaatttatgtagcaaat 36765853  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 39619098 - 39619041
Alignment:
Q  223 taaaatttaacacttatacgcaaatacccctcttaaatttaaaatttatgtaacaaat 280  Q
    |||||||||||| ||||  ||||||||| | || |||||||||||||||||| |||||    
T  39619098 taaaatttaacatttatgtgcaaatacctccctcaaatttaaaatttatgtagcaaat 39619041  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 41555295 - 41555328
Alignment:
Q  170 tgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||||| |||||||||||    
T  41555295 tgagtttaactcagttggtaggaacaatgcataa 41555328  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 22267507 - 22267547
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| | |||||||||||||||||| |||||||||||||    
T  22267507 gtcctcgtaagtttaactcagttggtacggacaatgcataa 22267547  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 29809332 - 29809360
Alignment:
Q  175 ttaactcagttggtagggacaatgcataa 203  Q
    |||||||||||||||||||||||||||||    
T  29809332 ttaactcagttggtagggacaatgcataa 29809360  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 34977198 - 34977238
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||||||||||||||| |||||||||||||    
T  34977198 gtcctcgtgagcttaactcagttggtatggacaatgcataa 34977238  T

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Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 45032687 - 45032727
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  45032687 gtcctcgtgagcttacctcagttggtagggacaatgcataa 45032727  T

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Target: scaffold1160 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 1770 - 1737
Alignment:
Q  172 agtttaactcagttggtagggacaatgcataaaa 205  Q
    ||||||||||||||||||||||||||||||||||    
T  1770 agtttaactcagttggtagggacaatgcataaaa 1737  T

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Target: scaffold0169 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 27453 - 27371
Alignment:
Q  4 aaattgtcaaacgttagtcaattacccccatccgtttgtttgagcagttaacccataagacgtggcaattaattgtacacgtgg 87  Q
    ||||||||||||| ||||||||||||||| |||||||||||  || ||||| ||||| || ||||||  ||| |||||| ||||    
T  27453 aaattgtcaaacgatagtcaattaccccc-tccgtttgttttggctgttaaaccatatgatgtggcatgtaaatgtacatgtgg 27371  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2028 - 2071
Alignment:
Q  1 ctgaaattgtcaaacgttagtcaattacccccatccgtttgttt 44  Q
    |||||||||| ||||||||||||||||||||| ||||| |||||    
T  2028 ctgaaattgttaaacgttagtcaattacccccctccgtctgttt 2071  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 239799 - 239841
Alignment:
Q  161 aagtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||||| |||||||| ||||||||||| |||||||||||||    
T  239799 aagtcctcgtgagtttagctcagttggtaaggacaatgcataa 239841  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 53446 - 53405
Alignment:
Q  164 tcctcttgagtttaactcagttggtagggacaatgcataaaa 205  Q
    ||||| |||| ||||||||||||| |||||||||||||||||    
T  53446 tcctcgtgagcttaactcagttggaagggacaatgcataaaa 53405  T

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Target: scaffold0188 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 28180 - 28140
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||| ||||||||||| |||||||||||||    
T  28180 gtcctcgtgagtttagctcagttggtatggacaatgcataa 28140  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 63856 - 63896
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||| |||||||||||||||||||| ||||    
T  63856 gtcctcgtgagtttagctcagttggtagggacaatgtataa 63896  T

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Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 71188 - 71228
Alignment:
Q  163 gtcctcttgagtttaactcagttggtagggacaatgcataa 203  Q
    |||||| |||||||| |||||||||||||||||||| ||||    
T  71188 gtcctcgtgagtttagctcagttggtagggacaatgtataa 71228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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