View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14350_low_4 (Length: 267)

Name: NF14350_low_4
Description: NF14350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14350_low_4
NF14350_low_4
[»] chr8 (8 HSPs)
chr8 (7-247)||(45105263-45105503)
chr8 (38-130)||(5543342-5543434)
chr8 (15-130)||(14414838-14414950)
chr8 (20-130)||(32895908-32896018)
chr8 (155-220)||(14414707-14414772)
chr8 (43-130)||(10704725-10704814)
chr8 (20-130)||(39728405-39728513)
chr8 (155-212)||(39728582-39728639)
[»] chr3 (8 HSPs)
chr3 (15-130)||(10239367-10239482)
chr3 (38-130)||(11840909-11841001)
chr3 (38-130)||(38450247-38450339)
chr3 (38-130)||(42192404-42192496)
chr3 (38-127)||(10761829-10761918)
chr3 (13-130)||(24644633-24644746)
chr3 (20-130)||(49156575-49156685)
chr3 (155-220)||(10761990-10762055)
[»] chr6 (8 HSPs)
chr6 (38-130)||(32030645-32030737)
chr6 (38-130)||(8651985-8652079)
chr6 (38-127)||(21192051-21192140)
chr6 (44-130)||(17580520-17580606)
chr6 (38-130)||(21771757-21771851)
chr6 (43-130)||(6102395-6102482)
chr6 (155-220)||(17580387-17580452)
chr6 (29-76)||(12437520-12437567)
[»] chr5 (5 HSPs)
chr5 (38-130)||(41296167-41296259)
chr5 (25-130)||(30771168-30771273)
chr5 (20-130)||(28526539-28526649)
chr5 (15-130)||(19060873-19060985)
chr5 (62-130)||(12687376-12687444)
[»] chr4 (6 HSPs)
chr4 (38-130)||(10734530-10734622)
chr4 (38-130)||(10948299-10948391)
chr4 (20-130)||(48166075-48166185)
chr4 (15-79)||(17627884-17627948)
chr4 (15-128)||(32283653-32283764)
chr4 (43-130)||(26957986-26958075)
[»] chr2 (5 HSPs)
chr2 (38-130)||(13460924-13461016)
chr2 (51-130)||(35085864-35085943)
chr2 (44-130)||(23342463-23342549)
chr2 (156-220)||(23342330-23342394)
chr2 (43-130)||(35440553-35440642)
[»] chr1 (4 HSPs)
chr1 (38-130)||(25382719-25382811)
chr1 (20-130)||(31056941-31057051)
chr1 (167-220)||(24928114-24928167)
chr1 (20-130)||(12184767-12184874)
[»] scaffold0363 (2 HSPs)
scaffold0363 (15-130)||(3761-3873)
scaffold0363 (155-220)||(3939-4004)
[»] chr7 (3 HSPs)
chr7 (20-130)||(350693-350803)
chr7 (20-130)||(3812323-3812433)
chr7 (43-130)||(35149168-35149255)
[»] scaffold0208 (2 HSPs)
scaffold0208 (20-130)||(30039-30148)
scaffold0208 (62-130)||(11289-11357)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 45105263 - 45105503
Alignment:
Q  7 tagattattctacaaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacat 106  Q
    ||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45105263 tagattaatcaacaaggcaatgaattttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacat 45105362  T
Q  107 ttaacaa-tacgcaaccaagtgacaaatactacttatacccaaaagccagacacacaaataatcttcaaattgttagatctctgatgcgagcataacctc 205  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45105363 gtaacaaatacgcaaccaagtgacaaatactacttatacccaaaagccagacacacaaataatcttcaaattgtcagatctctgatgcgagcataacctc 45105462  T
Q  206 tcttgttttctttaagctaatatagtttacgtatcgacaatt 247  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  45105463 tcttgttttctttaagctaatatagtttac-tatcgacaatt 45105503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 5543342 - 5543434
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  5543342 aaatttgttgttaaacaactatacgactgaattatgtcactatataacttgatcggtctttcaatacctttaacaatatgcaaccaagtgaca 5543434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 14414950 - 14414838
Alignment:
Q  15 tctacaaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaat 114  Q
    |||| |||||||| |||||||||||    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| |||||||||    
T  14414950 tctataaggcaataaactttataaag---gttgttgaataactataagactgaattatgtcactatataacttgagtggtctttcagtacctttaacaat 14414854  T
Q  115 acgcaaccaagtgaca 130  Q
    | ||||||||||||||    
T  14414853 atgcaaccaagtgaca 14414838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 32896018 - 32895908
Alignment:
Q  20 aaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgca 119  Q
    |||| ||||||| || |||| |||||| |  ||||| ||||| ||||||||||||||||||||||||| || ||||||||||||| |||||||||| |||    
T  32896018 aaggtaatgaaccttgtaaactttgttatcaaataaatatacaactgaattatgtcactatataactttagtggtctttcaatacctttaacaatatgca 32895919  T
Q  120 accaagtgaca 130  Q
    |||||||||||    
T  32895918 accaagtgaca 32895908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 14414772 - 14414707
Alignment:
Q  155 gacacacaaataatcttcaaattgttagatctctgatgcgagcataacctctcttgttttctttaa 220  Q
    ||||||||||| |||| |||||||| |||||||||||| |||||||| |||||||||| |||||||    
T  14414772 gacacacaaatgatctccaaattgtcagatctctgatgtgagcataagctctcttgttctctttaa 14414707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 10704814 - 10704725
Alignment:
Q  43 tgttgttgaataactatacgactgaattatgtcacta--tataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||||||||| |||| |||||||||||||  |||| ||| || |||| |||| ||| ||| || ||| ||||||||||||||    
T  10704814 tgttgttgaataactatatgactaaattatgtcactatatatatcttaagtggtccttcattaccttttactatatgcaaccaagtgaca 10704725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 39728405 - 39728513
Alignment:
Q  20 aaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataac-ttgagcggtctttcaatacatttaacaatacgc 118  Q
    |||||||| |||||||| ||   |||||||||||||||||| |||| ||| ||||||||||||| | || || | ||||||| ||| ||| || ||| ||    
T  39728405 aaggcaataaactttattaa---tgttgttgaataactatatgactaaatcatgtcactatatatctttaagtgatctttcattaccttttactatatgc 39728501  T
Q  119 aaccaagtgaca 130  Q
    ||||||||||||    
T  39728502 aaccaagtgaca 39728513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 39728582 - 39728639
Alignment:
Q  155 gacacacaaataatcttcaaattgttagatctctgatgcgagcataacctctcttgtt 212  Q
    |||||| |||| ||||||||||||| |||||||||||| |||||||| | ||||||||    
T  39728582 gacacataaatgatcttcaaattgtcagatctctgatgtgagcataaacactcttgtt 39728639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 10239367 - 10239482
Alignment:
Q  15 tctacaaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaat 114  Q
    |||| |||| |||||| |||  ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10239367 tctataaggtaatgaatttttaaaaatttgttgttaaacaactatacgactgaattatgtcactatataacttgagcggtctttcaatacctttaacaat 10239466  T
Q  115 acgcaaccaagtgaca 130  Q
    | ||||||||||||||    
T  10239467 atgcaaccaagtgaca 10239482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 11840909 - 11841001
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  11840909 aaatttgttgttaaacaactgtacgactgaattatgtcactatataacttgagcggtctttcaatacctttaacaatatgcaaccaagtgaca 11841001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 38450247 - 38450339
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  38450247 aaatttggtgttaaacaactatacgactgaattatgtcactatataacttgagcggtctttcaatacctttaacaatatgcaaccaagtgaca 38450339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 42192404 - 42192496
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  42192404 aaatttgttgttaaacaactatacgactgaattatgtcactatataacttgatcggtctttcaatacctttaacaatatgcaaccaagtgaca 42192496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 10761829 - 10761918
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtg 127  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||    
T  10761829 aaatttgttgttaaacaactatacgactgaattatgtcactatataacttgagaggtctttcaatacctttaacaatatgcaaccaagtg 10761918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 24644633 - 24644746
Alignment:
Q  13 attctacaaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaaca 112  Q
    |||| |||||||||| |||||||||||    ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| || |||||||    
T  24644633 attcaacaaggcaataaactttataaag---gttgttgaatagctataagactgaattatgtcactatataacttgagtggtctttcaaaac-tttaaca 24644728  T
Q  113 atacgcaaccaagtgaca 130  Q
    ||| |||| ||| |||||    
T  24644729 atatgcaaacaattgaca 24644746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 49156685 - 49156575
Alignment:
Q  20 aaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgca 119  Q
    |||| ||||||| || |||| |||||| |  ||||| ||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||  ||    
T  49156685 aaggtaatgaaccttgtaaactttgttatcaaataaatatacaactgaattatgtcactatataactttagtggtctttcaatacctttaacaatataca 49156586  T
Q  120 accaagtgaca 130  Q
    |||||||||||    
T  49156585 accaagtgaca 49156575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 10761990 - 10762055
Alignment:
Q  155 gacacacaaataatcttcaaattgttagatctctgatgcgagcataacctctcttgttttctttaa 220  Q
    ||||||| ||| |||| |||||||| |||| |||||||||||||||| || ||||||| |||||||    
T  10761990 gacacactaatgatctccaaattgtcagatttctgatgcgagcataagctgtcttgttctctttaa 10762055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 32030645 - 32030737
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  32030645 aaatttgttgttaaacaactatacgactgaattatgtcactatataacttgagcggtctttcaatacttttaacaatatgcaaccaagtgaca 32030737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 8651985 - 8652079
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactata--taacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||| || ||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  8651985 aaatttgttgttaaacaactatacgactgaattatgtcactatatataacttgagcggtctttcaatacctttaacaatatgcaaccaagtgaca 8652079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 21192051 - 21192140
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtg 127  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||    
T  21192051 aaatttgttgttaaactactatacgactgaattatgtcactatataacttgagcgatctttcaatacctttaacaatatgcaaccaagtg 21192140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 17580606 - 17580520
Alignment:
Q  44 gttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||||    
T  17580606 gttgttgaataactataagagtgaattatgtcactctataacttgagtggtctttcaatacctttaacaatatgcaaccaagtgaca 17580520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 21771757 - 21771851
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactata--taacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||| || |||||||||| |||||||||||||||||  ||||||||| ||||||||||||| |||||||||| ||||||||||||||    
T  21771757 aaatttgttgttaaacaactatacgattgaattatgtcactatatataacttgagaggtctttcaatacctttaacaatatgcaaccaagtgaca 21771851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 6102482 - 6102395
Alignment:
Q  43 tgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||| || ||||||||| ||| ||| || ||| ||||||||||||||    
T  6102482 tgttgttgaataactatatgactaaattatgtcactatatatcttaagtggtctttcattaccttttactatatgcaaccaagtgaca 6102395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 17580452 - 17580387
Alignment:
Q  155 gacacacaaataatcttcaaattgttagatctctgatgcgagcataacctctcttgttttctttaa 220  Q
    |||||| |||| ||||  |||||||||||||||||||| |||||||| |||||||||| |||||||    
T  17580452 gacacataaatgatctctaaattgttagatctctgatgtgagcataagctctcttgttctctttaa 17580387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 12437567 - 12437520
Alignment:
Q  29 aactttataaaatttgttgttgaataactatacgactgaattatgtca 76  Q
    ||||||||||||||||||| |||||||||||||||||  |||||||||    
T  12437567 aactttataaaatttgttgatgaataactatacgactatattatgtca 12437520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 41296259 - 41296167
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  41296259 aaatttgttgttaaacaactatacgactgaattatgtcactatataacttgagcggtctttcaatacctttaacaatatgcaaccaagtgaca 41296167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 30771273 - 30771168
Alignment:
Q  25 aatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaa 124  Q
    |||||||  |||||| |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  30771273 aatgaaccgtataaattttgttattaaataactatacgactgaattatgtcattatataacttgagcggtctttcaatacttttaactatatgcaaccaa 30771174  T
Q  125 gtgaca 130  Q
    ||||||    
T  30771173 gtgaca 30771168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 28526539 - 28526649
Alignment:
Q  20 aaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgca 119  Q
    |||| ||||||| || |||| |||||| |  ||||| ||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||  ||    
T  28526539 aaggtaatgaaccttgtaaactttgttatcaaataaatatacaactgaattatgtcactatataactttagtggtctttcaatacctttaacaatataca 28526638  T
Q  120 accaagtgaca 130  Q
    |||||||||||    
T  28526639 accaagtgaca 28526649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 19060873 - 19060985
Alignment:
Q  15 tctacaaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaat 114  Q
    |||| |||||||| |||||||||||   |||||||||||||||||| |||| |||||||||||| |||| ||| || ||||||||||| ||||| || ||    
T  19060873 tctataaggcaataaactttataaa---tgttgttgaataactatatgactaaattatgtcactgtatatcttaagtggtctttcaatgcattttactat 19060969  T
Q  115 acgcaaccaagtgaca 130  Q
    | |||| |||||||||    
T  19060970 atgcaatcaagtgaca 19060985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 12687376 - 12687444
Alignment:
Q  62 gactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||| ||||||||||||||||| ||| ||  |||||||||||| ||| || ||| ||||||||||||||    
T  12687376 gactaaattatgtcactatatatcttaagttgtctttcaataccttttactatatgcaaccaagtgaca 12687444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 10734530 - 10734622
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  10734530 aaatttgttgttaaacaactatacgactgaattatgtcactatataacttgagcggtctttcaatacctttaacaatatgcaaccaagtgaca 10734622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 10948299 - 10948391
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  10948299 aaatttgttgttaaacaactatacgactgaattatgtcactatataacttgagcggtctttcaatacctttaacaatatgcaaccaagtgaca 10948391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 48166185 - 48166075
Alignment:
Q  20 aaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgca 119  Q
    |||| ||||||| || |||| |||||| |  ||||| ||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||  ||    
T  48166185 aaggtaatgaacgttgtaaactttgttatcaaataaatatacaactgaattatgtcactatataactttagtggtctttcaatacctttaacaatataca 48166086  T
Q  120 accaagtgaca 130  Q
    |||||||||||    
T  48166085 accaagtgaca 48166075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 17627884 - 17627948
Alignment:
Q  15 tctacaaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcacta 79  Q
    |||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17627884 tctataaggtaatgaactttataaaatttgttgttgaaaaactatacgactgaattatgtcacta 17627948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 32283764 - 32283653
Alignment:
Q  15 tctacaaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcacta--tataacttgagcggtctttcaatacatttaaca 112  Q
    |||| |||||||||| || |||||||||||||||||||||| |||||||||||||||||  ||||  ||||||||||| ||   || ||||||||| ||     
T  32283764 tctataaggcaatga-ctctataaaatttgttgttgaataattatacgactgaattatggaactatgtataacttgagtgg---tttaatacattttact 32283669  T
Q  113 atacgcaaccaagtga 128  Q
    ||| ||||||||||||    
T  32283668 atatgcaaccaagtga 32283653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 26957986 - 26958075
Alignment:
Q  43 tgttgttgaataactatacgactgaattatgtcactatataa--cttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||||||||| |||| |||||||||||||||||   ||  || ||||||||| ||| ||| || ||| ||||||||||||||    
T  26957986 tgttgttgaataactatatgactaaattatgtcactatatatatctcaagtggtctttcattaccttttactatatgcaaccaagtgaca 26958075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 13461016 - 13460924
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  13461016 aaatttgttgttaaacaactatacgactgaattatgtcactatataacttgatcggtctttcaatacctttaacaatatgcaaccaagtgaca 13460924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 35085864 - 35085943
Alignment:
Q  51 aataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    ||||| ||||| ||||||||||||||||||||||||| || ||||||||||||| |||||||||| |||| |||||||||    
T  35085864 aataaatatacaactgaattatgtcactatataactttagtggtctttcaatacctttaacaatatgcaatcaagtgaca 35085943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 23342549 - 23342463
Alignment:
Q  44 gttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||| |||||| |||| ||||||||||||||||| ||| ||  |||||||||||| ||| || ||| ||||||||||||||    
T  23342549 gttgttgaattactatatgactaaattatgtcactatatatcttaagttgtctttcaataccttttactatatgcaaccaagtgaca 23342463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 23342394 - 23342330
Alignment:
Q  156 acacacaaataatcttcaaattgttagatctctgatgcgagcataacctctcttgttttctttaa 220  Q
    |||||| ||| |||| |||||||| |||||||||||| ||||||||  ||||||||| |||||||    
T  23342394 acacactaatgatctccaaattgtcagatctctgatgtgagcataaattctcttgttctctttaa 23342330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 35440553 - 35440642
Alignment:
Q  43 tgttgttgaataactatacgactgaattatgtcac--tatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    ||||| |||||||||||| |||| |||||||||||  |||||| ||| || ||||||||| ||| ||| ||  || ||||||||||||||    
T  35440553 tgttgatgaataactatatgactaaattatgtcactatatatatcttaagtggtctttcattaccttttactttatgcaaccaagtgaca 35440642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 25382719 - 25382811
Alignment:
Q  38 aaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  25382719 aaatttgttgttaaacaactatacgactgaattatgtcactatataacttgatcggtctttcaatacctttaacaatatgcaaccaagtgaca 25382811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 31057051 - 31056941
Alignment:
Q  20 aaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgca 119  Q
    |||| ||||||| || |||| |||||| |  ||||| ||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||  ||    
T  31057051 aaggtaatgaaccttgtaaactttgttatcaaataaatatacaactgaattatgtcactatataactttagtggtctttcaatacctttaacaatataca 31056952  T
Q  120 accaagtgaca 130  Q
    |||||||||||    
T  31056951 accaagtgaca 31056941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 24928114 - 24928167
Alignment:
Q  167 atcttcaaattgttagatctctgatgcgagcataacctctcttgttttctttaa 220  Q
    |||| |||||||| |||||||||||| |||||||| |||||||||| |||||||    
T  24928114 atctccaaattgtcagatctctgatgtgagcataaactctcttgttctctttaa 24928167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 12184767 - 12184874
Alignment:
Q  20 aaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgca 119  Q
    |||||||| |||||||| ||   ||||| | ||||| |||| |||| ||||||||||||||||| ||| || | ||||||| || |||| || ||| |||    
T  12184767 aaggcaataaactttattaa---tgttgcttaataattatatgactaaattatgtcactatatatcttcagtgatctttcattatattttactatatgca 12184863  T
Q  120 accaagtgaca 130  Q
    | |||||||||    
T  12184864 aacaagtgaca 12184874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 3761 - 3873
Alignment:
Q  15 tctacaaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaat 114  Q
    |||| |||||||| |||||||||||    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| |||||||||    
T  3761 tctataaggcaataaactttataaag---gttgttgaataactataagactgaattatgtcactatataacttgagtggtctttcagtacctttaacaat 3857  T
Q  115 acgcaaccaagtgaca 130  Q
    | ||||||||||||||    
T  3858 atgcaaccaagtgaca 3873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 3939 - 4004
Alignment:
Q  155 gacacacaaataatcttcaaattgttagatctctgatgcgagcataacctctcttgttttctttaa 220  Q
    ||||||||||| |||| |||||||| |||||||||||| |||||||| |||||||||| |||||||    
T  3939 gacacacaaatgatctccaaattgtcagatctctgatgtgagcataagctctcttgttctctttaa 4004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 350803 - 350693
Alignment:
Q  20 aaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgca 119  Q
    |||| ||||||| || |||| |||||| |  ||||| ||||| ||||||||||||||||||||||||| || ||||||||||||| |||||||||| |||    
T  350803 aaggtaatgaaccttgtaaactttgttatcaaataaatatacaactgaattatgtcactatataactttagtggtctttcaatacctttaacaatatgca 350704  T
Q  120 accaagtgaca 130  Q
    | |||||||||    
T  350703 atcaagtgaca 350693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 3812323 - 3812433
Alignment:
Q  20 aaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgca 119  Q
    |||| ||||||| || |||| |||||| |  ||||| ||||| ||||||||||||||||| ||||||| || ||||||||||||| ||||||||||  ||    
T  3812323 aaggtaatgaaccttgtaaactttgttatcaaataaatatacaactgaattatgtcactacataactttagtggtctttcaatacctttaacaatataca 3812422  T
Q  120 accaagtgaca 130  Q
    |||||||||||    
T  3812423 accaagtgaca 3812433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 35149168 - 35149255
Alignment:
Q  43 tgttgttgaataactatacgactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||||||||||| |||||  ||| ||||||||||||||||| ||| || ||||||||| ||| ||| || ||| ||||||||||||||    
T  35149168 tgttgttgaatacctatataactaaattatgtcactatatatcttaagtggtctttcattaccttttactatatgcaaccaagtgaca 35149255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 30148 - 30039
Alignment:
Q  20 aaggcaatgaactttataaaatttgttgttgaataactatacgactgaattatgtcacta--tataacttgagcggtctttcaatacatttaacaatacg 117  Q
    |||||||| |||||||| ||   |||||||||||||||||| |||| |||||||||||||  |||| ||| || ||||||||| ||| ||| || ||| |    
T  30148 aaggcaataaactttattaa---tgttgttgaataactatatgactaaattatgtcactatatatatcttaagtggtctttcattaccttttactatatg 30052  T
Q  118 caaccaagtgaca 130  Q
    |||||||||||||    
T  30051 caaccaagtgaca 30039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 11357 - 11289
Alignment:
Q  62 gactgaattatgtcactatataacttgagcggtctttcaatacatttaacaatacgcaaccaagtgaca 130  Q
    |||| ||||||||||||||||| ||| ||  |||||||||||| ||| || ||| ||||||||||||||    
T  11357 gactaaattatgtcactatatatcttaagttgtctttcaataccttttactatatgcaaccaagtgaca 11289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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