View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14351_high_11 (Length: 350)

Name: NF14351_high_11
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14351_high_11
NF14351_high_11
[»] chr6 (13 HSPs)
chr6 (73-338)||(2586421-2586686)
chr6 (98-338)||(2620111-2620351)
chr6 (95-338)||(2432836-2433079)
chr6 (95-338)||(2677230-2677473)
chr6 (111-338)||(2572410-2572637)
chr6 (111-338)||(2448703-2448930)
chr6 (112-338)||(2599989-2600215)
chr6 (111-338)||(2644808-2645035)
chr6 (38-131)||(2677094-2677191)
chr6 (32-84)||(2588400-2588452)
chr6 (32-133)||(2433123-2433227)
chr6 (18-50)||(2433043-2433075)
chr6 (18-50)||(2677234-2677266)
[»] chr7 (1 HSPs)
chr7 (200-331)||(17872673-17872804)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 2586686 - 2586421
Alignment:
Q  73 tcatatttggtttatagcatattgacaaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagct 172  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  2586686 tcatatttggtttatagcatatttacaaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgaaatgaaattatgagcattagaagct 2586587  T
Q  173 ttagcagcatccataatttcttcaaatgtagcatcctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttacta 272  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  2586586 ttagcagcatccacaacatcttcaaatgtagcatcctctcttccaaaaagtatattctccttgatgcttgttgcaaacaaagcaggttcttgactcacta 2586487  T
Q  273 aacccatttgagacctaagccacttaagttgcaacttatgaatagcaactccatcaagaataatct 338  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2586486 aacccatttgtgacctaagccacttaagttgcaacttatgaatagcaactccatcaagaagaatct 2586421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 98 - 338
Target Start/End: Complemental strand, 2620351 - 2620111
Alignment:
Q  98 caaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccataatttcttcaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||     
T  2620351 caaaagcaatcaacactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcat 2620252  T
Q  198 atgtagcatcctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccactt 297  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2620251 atgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagccactt 2620152  T
Q  298 aagttgcaacttatgaatagcaactccatcaagaataatct 338  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  2620151 aagttgcaacttatgaatagcaactccatcaagaagaatct 2620111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 95 - 338
Target Start/End: Complemental strand, 2433079 - 2432836
Alignment:
Q  95 tgacaaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccataatttctt 194  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  2433079 tgacaaaagtaattaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttggcagcatccacaatttctt 2432980  T
Q  195 caaatgtagcatcctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagcca 294  Q
    || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2432979 catatgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagcca 2432880  T
Q  295 cttaagttgcaacttatgaatagcaactccatcaagaataatct 338  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  2432879 cttaagttgcaacttatgaatagcaactccatcaagaagaatct 2432836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 95 - 338
Target Start/End: Original strand, 2677230 - 2677473
Alignment:
Q  95 tgacaaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccataatttctt 194  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||  |||||||    
T  2677230 tgacaaaagtaattaacactaacctgagtatcatatccttgtggcaacattgaaatgaaattatgagcattagaagctttagcagcatccacgatttctt 2677329  T
Q  195 caaatgtagcatcctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagcca 294  Q
    || ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2677330 catatgtagcatcctctcttccaaaaagtatattctccataatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagcca 2677429  T
Q  295 cttaagttgcaacttatgaatagcaactccatcaagaataatct 338  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  2677430 cttaagttgcaacttatgaatagcaactccatcaagaagaatct 2677473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 111 - 338
Target Start/End: Original strand, 2572410 - 2572637
Alignment:
Q  111 cactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccataatttcttcaaatgtagcatcctc 210  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  2572410 cactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcatcctc 2572509  T
Q  211 tcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccacttaagttgcaactta 310  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  2572510 tcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaactta 2572609  T
Q  311 tgaatagcaactccatcaagaataatct 338  Q
    |||||||||||||||||||||| |||||    
T  2572610 tgaatagcaactccatcaagaagaatct 2572637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 111 - 338
Target Start/End: Complemental strand, 2448930 - 2448703
Alignment:
Q  111 cactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccataatttcttcaaatgtagcatcctc 210  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||  |||||| |||||||||||||    
T  2448930 cactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaacatcttcatatgtagcatcctc 2448831  T
Q  211 tcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccacttaagttgcaactta 310  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2448830 tcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagccacttaagttgcaactta 2448731  T
Q  311 tgaatagcaactccatcaagaataatct 338  Q
    |||||||||||||||||||||| |||||    
T  2448730 tgaatagcaactccatcaagaagaatct 2448703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 112 - 338
Target Start/End: Original strand, 2599989 - 2600215
Alignment:
Q  112 actaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccataatttcttcaaatgtagcatcctct 211  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||| ||||||||||| || |||||||||| ||||||||||||||    
T  2599989 actaacctgagtatcatatacttgtggcaacaatgaaatgaaattatgagcattagaagttttagcagcattcacaatttcttcatatgtagcatcctct 2600088  T
Q  212 cttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccacttaagttgcaacttat 311  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2600089 cttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagccacttaagttgcaacttat 2600188  T
Q  312 gaatagcaactccatcaagaataatct 338  Q
    ||||||||||||||||||||| |||||    
T  2600189 gaatagcaactccatcaagaagaatct 2600215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 111 - 338
Target Start/End: Original strand, 2644808 - 2645035
Alignment:
Q  111 cactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccataatttcttcaaatgtagcatcctc 210  Q
    |||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| | ||  |||||| |||||||||||||    
T  2644808 cactaacctgcgtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaaactttagcagcatctacaacatcttcatatgtagcatcctc 2644907  T
Q  211 tcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccacttaagttgcaactta 310  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2644908 tcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccactgaagttgcaactta 2645007  T
Q  311 tgaatagcaactccatcaagaataatct 338  Q
    ||||| |||||||||||||||| |||||    
T  2645008 tgaatggcaactccatcaagaagaatct 2645035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 2677094 - 2677191
Alignment:
Q  38 tgagtattatatcttaggaaaattccact-aattactcatatttggtttatagcatat---tgacaaaagcaatcaacactaacctgagtatcatatc 131  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||||| |||||||||   ||||||||||||| | ||||||||  |||||||||||    
T  2677094 tgagtatcatatctaaggaaaattccacttaattactcatatttggttaatagcatattaatgacaaaagcaattagcactaacccaagtatcatatc 2677191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 2588452 - 2588400
Alignment:
Q  32 ctaacctgagtattatatcttaggaaaattccactaattactcatatttggtt 84  Q
    ||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  2588452 ctaacatgagtatcatatcctaggaaaattccagtaattactcatatttggtt 2588400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 2433227 - 2433123
Alignment:
Q  32 ctaacctgagtattatatcttaggaaaattccac-taattactcatatttggtttatagcatat---tgacaaaagcaatcaacactaacctgagtatca 127  Q
    ||||||| ||||| ||||| ||||||| |||||| ||| ||||||||||||||| |||||||||   ||||||||||||| | ||||||||  |||||||    
T  2433227 ctaacctaagtatcatatcctaggaaa-ttccacataactactcatatttggttaatagcatattaatgacaaaagcaattagcactaacccaagtatca 2433129  T
Q  128 tatcct 133  Q
     |||||    
T  2433128 aatcct 2433123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 2433075 - 2433043
Alignment:
Q  18 aaaagtaattaacactaacctgagtattatatc 50  Q
    ||||||||||||||||||||||||||| |||||    
T  2433075 aaaagtaattaacactaacctgagtatcatatc 2433043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 2677234 - 2677266
Alignment:
Q  18 aaaagtaattaacactaacctgagtattatatc 50  Q
    ||||||||||||||||||||||||||| |||||    
T  2677234 aaaagtaattaacactaacctgagtatcatatc 2677266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 200 - 331
Target Start/End: Original strand, 17872673 - 17872804
Alignment:
Q  200 gtagcatcctctcttccaaaaagtatattctccttaatacttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccacttaa 299  Q
    |||||||| ||| | ||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||| || || |||||    ||||||||||| ||||    
T  17872673 gtagcatcttctttaccaaaaattatattctctttaatgcttgttgcaaataaagcaggttcttgactaaccaaccccatcattgacctaagccatttaa 17872772  T
Q  300 gttgcaacttatgaatagcaactccatcaaga 331  Q
      ||||| ||| ||||||| ||||||||||||    
T  17872773 tctgcaagttacgaatagctactccatcaaga 17872804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University