View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14351_high_15 (Length: 268)
Name: NF14351_high_15
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_high_15 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 13282573 - 13282829
Alignment:
| Q |
12 |
atgaatacagaaaagttatacatttagaatttcaatatggtatcagctgctacatctcatatgcatgtgtaaacaaaatagtctgctacaattagataat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13282573 |
atgaatacagaaaagttatacatttagaatttcaatatggtatcagctgctacatctcatatgcatgtgtaaacaaaatagtctgctacaattagataat |
13282672 |
T |
|
| Q |
112 |
ttattttgaacaaaaaacagcattgccaatatattcaatattaactagcatgccatctacttatgactctaagagcaggttaaagatttattttcaaatt |
211 |
Q |
| |
|
|| |||||||| ||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||| |
|
|
| T |
13282673 |
tttctttgaacagaaaacagtattgacaatatattcaatattaactagcataccatctacttatgactctgagagaaggttaaatatttattttcatatt |
13282772 |
T |
|
| Q |
212 |
tcaacaaaggtgaaagctaaaaatgattggacagaaatgaatgaatattgacatcaa |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
13282773 |
tcaacaaaggtgaaagctaaaaatgattggtcagaaatgaatgaatattaacatcaa |
13282829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 169 - 268
Target Start/End: Complemental strand, 6139368 - 6139269
Alignment:
| Q |
169 |
tacttatgactctaagagcaggttaaagatttattttcaaatttcaacaaaggtgaaagctaaaaatgattggacagaaatgaatgaatattgacatcaa |
268 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
6139368 |
tacttatgattcttagagcaggttaaagatttattttcatatttcaacaaaggtgggagctacaaatgattggacataaattaatgaatattaacatcaa |
6139269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 268
Target Start/End: Complemental strand, 6165193 - 6165083
Alignment:
| Q |
158 |
agcatgccatctacttatgactctaagagcaggttaaagatttattttcaaatttcaacaaaggtgaaagctaaaaatgattggacagaaatgaatgaat |
257 |
Q |
| |
|
||||||| || ||||||||||||| |||| ||||||||||||| |||||| ||||||| ||||||| |||||||||| ||| |||| ||||||||||| |
|
|
| T |
6165193 |
agcatgcaatatacttatgactctgagagtaggttaaagatttgttttcatatttcaataaaggtgggagctaaaaattatttgacataaatgaatgaac |
6165094 |
T |
|
| Q |
258 |
attgacatcaa |
268 |
Q |
| |
|
||| ||||||| |
|
|
| T |
6165093 |
attaacatcaa |
6165083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 6234526 - 6234420
Alignment:
| Q |
57 |
gctgctacatctcatatgcatgtgtaaacaaaatagtc-tgcta-caattagataatttattttgaacaaaaaacagcattgccaatatattcaatatta |
154 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| || || |||||||||| || |||| |||| ||| ||| || | |||||||||||||||| |
|
|
| T |
6234526 |
gctgctacatctgatatgcatgtgtaaacaaaaaagtcttgatagcaattagatatattttttttaacagaaatcagtatggagaatatattcaatatta |
6234427 |
T |
|
| Q |
155 |
actagca |
161 |
Q |
| |
|
| ||||| |
|
|
| T |
6234426 |
aatagca |
6234420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 6725827 - 6725883
Alignment:
| Q |
197 |
atttattttcaaatttcaacaaaggtgaaagctaaaaatgattggacagaaatgaat |
253 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| |||| |||||||||||| |
|
|
| T |
6725827 |
atttattttcatatttcaacaaaggtgggagctaaaaaatattgtacagaaatgaat |
6725883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 6234368 - 6234331
Alignment:
| Q |
183 |
agagcaggttaaagatttattttcaaatttcaacaaag |
220 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
6234368 |
agagcagcttaaagatttattttcatatttcaacaaag |
6234331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 6412531 - 6412587
Alignment:
| Q |
197 |
atttattttcaaatttcaacaaaggtgaaagctaaaaatgattggacagaaatgaat |
253 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||||||| |||| ||||||||||| |
|
|
| T |
6412531 |
atttattttcatatttcaacgaaggtgggagctaaaaattattgtgcagaaatgaat |
6412587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University