View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_high_2 (Length: 662)
Name: NF14351_high_2
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-138; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 215 - 507
Target Start/End: Complemental strand, 34483933 - 34483638
Alignment:
| Q |
215 |
tcaagagaagaagcttataaactcattcaaattgagattgaagattattggatgattatgaatgaagagtgcctcaagatagaaaacatcccaaggccgg |
314 |
Q |
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| T |
34483933 |
tcaagagaagaagcttataaacttattcaaattgagattgaagattattggataattatgaatgaagagtgcctcaagatagaaaacattccaaggtcgg |
34483834 |
T |
|
| Q |
315 |
tgcttgaaattattcttagtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgt |
414 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34483833 |
tgcttgaaattattcttaatgtggcacgaataacagagttcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgt |
34483734 |
T |
|
| Q |
415 |
tgcactacttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagcggcta---ttactgctttatgcatctc |
507 |
Q |
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| T |
34483733 |
tgcactacttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagtggctacttttactgttttatgcatctc |
34483638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 138 - 490
Target Start/End: Complemental strand, 34448646 - 34448294
Alignment:
| Q |
138 |
tgctttatttatagtttgagcagaaaagagtacatgttgcttctgcagttgaatgttgcatgaaacaatatgatatatcaagagaagaagcttataaact |
237 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||| || ||| ||||||| |||||||| | |
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| T |
34448646 |
tgctttatttatagtttgagcaagaaagagtgcatgttgcttctgcagtggaatgttgcatgaagcaatatgacatgtcaggagaagaggcttataactt |
34448547 |
T |
|
| Q |
238 |
cattcaaattgagattgaagattattggatgattatgaatgaagagtgcctcaagatagaaaacatcccaaggccggtgcttgaaattattcttagtgtg |
337 |
Q |
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| T |
34448546 |
cattcgcaaggaaatcgagaattattggaaggtcatgaatgaagagtgtctcaagttagacaacatcccaagaccagtgcttgaatttattatgaatgtg |
34448447 |
T |
|
| Q |
338 |
gcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgttgcactacttatagatcctataa |
437 |
Q |
| |
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|| ||| | || || || |||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| | |||||||||| |
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| T |
34448446 |
gcgcgagtgactgagtttgcatacgaaaactttgaggataaatacacaaaaccagaactgctaaaagattacattgttgcactacttgtggatcctataa |
34448347 |
T |
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| Q |
438 |
gaatcgagcaatgcaagtagaagaagcaaaatcaattataataagcggctatt |
490 |
Q |
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| T |
34448346 |
gcatcgagctaagtgagtagaagaagcaagatcagttataataagtggctatt |
34448294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 34484094 - 34483935
Alignment:
| Q |
21 |
ctaatgacttatttctacaaaatagaaatttttactctcaaaccattatacttgtattttgtatagtttattttactctacgtatttatgccagagttag |
120 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34484094 |
ctaatgacttatttctacaaaatagaagtttttactctcaaaccattatacttgtattttgtatagtttattttactctaagtatttatgccagagttag |
34483995 |
T |
|
| Q |
121 |
tatctcagaaatttggatgctttatttatagtttgagcagaaaagagtacatgttgcttc |
180 |
Q |
| |
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| T |
34483994 |
tatctcacaaatttggatgctttatttatagtttgagcagcaaagagtgcatgttgcttc |
34483935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 132 - 490
Target Start/End: Complemental strand, 34459885 - 34459527
Alignment:
| Q |
132 |
tttggatgctttatttatagtttgagcagaaaagagtacatgttgcttctgcagttgaatgttgcatgaaacaatatgatatatcaagagaagaagctta |
231 |
Q |
| |
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|||||||| |||||||| |||||||||| |||| || |||||||| ||||||||||| ||||||||||| |||||||| |||||| |||||| ||||| |
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| T |
34459885 |
tttggatggtttatttacagtttgagcacgaaagggtgcatgttgcctctgcagttgattgttgcatgaagcaatatgacatatcacaagaagaggctta |
34459786 |
T |
|
| Q |
232 |
taaactcattcaaattgagattgaagattattggatgattatgaatgaagagtgcctcaagatagaaaacatcccaaggccggtgcttgaaattattctt |
331 |
Q |
| |
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||||||||||| | ||||||||||||| |||| ||||||||||||||||||| || || | |||| |||||||| ||||||||| ||||||| |
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| T |
34459785 |
taaactcattctcaaggagattgaagatttatggagagttatgaatgaagagtgcctaaaattacaccacattccaaggccagtgcttgaatgtattctt |
34459686 |
T |
|
| Q |
332 |
agtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgttgcactacttatagatc |
431 |
Q |
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| | | || ||| ||| | |||| ||||||| |||||||||||||||||||||| |||| ||| | ||||||||||||| |||||| ||| |||||| |
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| T |
34459685 |
aattttgcgcgaggaactcacttcatatacgaagactttgaggataaatacacaaatccagatctgctcaaagattacattgctgcactgcttgtagatc |
34459586 |
T |
|
| Q |
432 |
ctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagcggctatt |
490 |
Q |
| |
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||||||| |||||||||||| |||||||||||||| |||| |||||||||| ||||||| |
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|
| T |
34459585 |
ctataagcatcgagcaatgcgagtagaagaagcaagatcagttataataagtggctatt |
34459527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 150 - 438
Target Start/End: Complemental strand, 34473906 - 34473618
Alignment:
| Q |
150 |
agtttgagcagaaaagagtacatgttgcttctgcagttgaatgttgcatgaaacaatatgatatatcaagagaagaagcttataaactcattcaaattga |
249 |
Q |
| |
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||||||||||| |||| || ||||||||| | |||||||||||||||||||| ||||| | || ||| |||||| || ||||| | |||| | | || |
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| T |
34473906 |
agtttgagcagcaaagggtgcatgttgctgcagcagttgaatgttgcatgaagcaatacaacatgtcacaagaagaggcctataagcacattaacaagga |
34473807 |
T |
|
| Q |
250 |
gattgaagattattggatgattatgaatgaagagtgcctcaagatagaaaacatcccaaggccggtgcttgaaattattcttagtgtggcacgaataaca |
349 |
Q |
| |
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|||||||||| ||||||| ||| |||||||||| ||||||| |||| ||||||| | || ||||||||| |||||||| ||||||||||||||| |
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| T |
34473806 |
cattgaagatttttggatggatataaatgaagagttcctcaagttagactacatccccaaccctgtgcttgaatgtattcttaatgtggcacgaataacc |
34473707 |
T |
|
| Q |
350 |
gaattcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgttgcactacttatagatcctataag |
438 |
Q |
| |
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|| ||||| |||||||||| ||||||||||||||||| | |||||| ||||||| || |||||||||| || |||||||| ||||| |
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| T |
34473706 |
gagttcacctacgaaaactacgaggataaatacacaaatggggaactgttgaaagactatgttgttgcacttctcatagatccaataag |
34473618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 647
Target Start/End: Complemental strand, 34483384 - 34483295
Alignment:
| Q |
559 |
gccacagtttgaaatctaaattacctacgtatcattaaatttgtcaatttata-tttccaggtacatatttaaattgatgacgacttgct |
647 |
Q |
| |
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| T |
34483384 |
gccacagtttgaaatctaaattaccttcgcaccattacatttgtcagtacatattttccacgtacattttttatttgctgacgacttgct |
34483295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 140 - 415
Target Start/End: Original strand, 6132153 - 6132428
Alignment:
| Q |
140 |
ctttatttatagtttgagcagaaaagagtacatgttgcttctgcagttgaatgttgcatgaaacaatatgatatatcaagagaagaagcttataaactca |
239 |
Q |
| |
|
|||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||||| ||||||| |
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| T |
6132153 |
ctttgtttacagtttgagcagcaaagagtgcatgttgcttctgcagttgaatgttgcatgaagcaatatgatatgtcacaagaggaagcttacaaactca |
6132252 |
T |
|
| Q |
240 |
ttcaaattgagattgaagattattggatgattatgaatgaagagtgcctcaagatagaaaacatcccaaggccggtgcttgaaattattcttagtgtggc |
339 |
Q |
| |
|
||| | ||||| |||||||||||||| |||||||||||||||| ||||| |||| ||||||||| || ||| | |||| |||| ||| |||||| |
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|
| T |
6132253 |
ttctgaaagagatcgaagattattggatagttatgaatgaagagtgtctcaaattagactgcatcccaagcccagtggtcgaaagtattgttaatgtggc |
6132352 |
T |
|
| Q |
340 |
acgaataacagaattcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgtt |
415 |
Q |
| |
|
||| || | || ||||||||||||||||||||||||||||||||||| | ||| || ||||||| ||||||||| |
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|
| T |
6132353 |
gcgagtagccgagttcacatacgaaaactttgaggataaatacacaaatggggaattgctgaaagactacattgtt |
6132428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 173 - 323
Target Start/End: Original strand, 6135842 - 6135987
Alignment:
| Q |
173 |
gttgcttctgcagttgaatgttgcatgaaacaatatgatatatcaagagaagaagcttataaactcattcaaattgagattgaagattattggatgatta |
272 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| || | || || ||||||| ||||||| | |||||||| ||| ||||||| |||| |
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| T |
6135842 |
gttgcttctacagttgaatgttgcatgaagcaatatgacatgtgaatag-----gcttatagactcattttgaaagagattgacgataattggataatta |
6135936 |
T |
|
| Q |
273 |
tgaatgaagagtgcctcaagatagaaaacatcccaaggccggtgcttgaaa |
323 |
Q |
| |
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|||||||||||||||||||| |||| ||| ||||| || |||||||||| |
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|
| T |
6135937 |
tgaatgaagagtgcctcaagttagattgcataccaagaccagtgcttgaaa |
6135987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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