View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_high_20 (Length: 237)
Name: NF14351_high_20
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 27258413 - 27258609
Alignment:
| Q |
23 |
cagttcgaatcatgtacaagaataagttatactcatttggtgaaataatgatcaacaaattttctttaacaattgagtgcccacaagataatatttggtt |
122 |
Q |
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| T |
27258413 |
cagttcgaatcatgtacaagaataagtta-actcatttggtgaaataatgatcaacaaattttctttaacaattgagtgaccactagataatatttggtt |
27258511 |
T |
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| Q |
123 |
aaacgatgactaaaatatttgtattataaggaaaactatcatatgaaaagttgcgattctcctaatattttaatatttcttgtttcattgtcaagggt |
220 |
Q |
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| T |
27258512 |
aaacgatgactaaaatatttgtattataaggaaaactatcatatgaaaagttgcgattctcctaatattttaatatttcttgtttcattgtcaagggt |
27258609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 27258652 - 27258733
Alignment:
| Q |
137 |
atatttgtattataaggaaaactatcatatgaaaagttgcgattctcctaatattttaatatttcttgtttcattgtcaagg |
218 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27258652 |
atatttgtattacaaggaaaactatcatatgaaaagttgtgattctcctaatattttaatatttcttgtttcaatgtcaagg |
27258733 |
T |
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