View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14351_high_23 (Length: 224)

Name: NF14351_high_23
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14351_high_23
NF14351_high_23
[»] chr7 (1 HSPs)
chr7 (16-132)||(32647380-32647496)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 32647380 - 32647496
Alignment:
16 agtttaagccttgatgccagtgaaccgagacaagagagcataatacaaatttaaataaatgagtctattgtaagagatgctgaactaggagacaacatgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
32647380 agtttaagccttgatgccagtgaaccgagacaagagagcataatacaaatttaaataaatgagtctattgtcagagatgctgaactaggagacaacatgt 32647479  T
116 aaattcacctagttagc 132  Q
    |||||||||||||||||    
32647480 aaattcacctagttagc 32647496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University