View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14351_high_3 (Length: 494)
Name: NF14351_high_3
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Complemental strand, 39780985 - 39780554
Alignment:
| Q |
15 |
caaaggcacaccctacagaaaaataccaatagctttagaaaaatattattagtcactagttgacacttcttgtaatactaacatactatcgtttgtaatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39780985 |
caaaggcacaccctacagaaaaataccaatagctttagaaaaatattactagtcactagttcacacttcttgtaatactaacatactatcgtttgtaatt |
39780886 |
T |
|
| Q |
115 |
ccaaaaaagatactaacaacataataacatactatcgtttcccatgcataataacacgcacaacataataatactaacatactatcatttgtaattccaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39780885 |
ccaaaaaagatactaacaacataataacatactatcgtttcccatgcataataacacgcacaacataataatactaacatactatcacttgtaattccaa |
39780786 |
T |
|
| Q |
215 |
aaaagataaaaacatcttgcacaaaatcaggatatggagtagcgtcgaatcttgtctagttgtatgcgatctttgggacgtatgacaggatgagcacgtt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39780785 |
aaaagataaaaacatcttgcacaaaatcaggatatggagtagcgtcgaatcttgtctagttgtatgcgatctttgggacgtatgacaggatgagcacgtt |
39780686 |
T |
|
| Q |
315 |
gaaaaggagaaagacggccaagttttctggaaactgagtttaggaatgattttctaggcaaaggaggcttatcagctgaaggtgaagaaacatttaacaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39780685 |
gaaaaggagaaagacggccaagttttctggaaactgagtttaggaatgattttctaggcaaaggaggcttatcagctgaaggtgaagaaacgtttaacaa |
39780586 |
T |
|
| Q |
415 |
aggactattaataggtgattcaagtactgtac |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39780585 |
aggactattaataggtgattcaagtactgtac |
39780554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University