View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_high_5 (Length: 461)
Name: NF14351_high_5
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_high_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 2 - 461
Target Start/End: Complemental strand, 35204732 - 35204273
Alignment:
| Q |
2 |
tcgagtgagaagaatgaaaaacaaagacgaagagaaattaaatcatagatgcagtagatgaagtggagggaaaacaaggagtaaatatccaattttgtcc |
101 |
Q |
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|||| ||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204732 |
tcgaatgaaaagaatgaaaaacaaaaaagaagagaaattaaatcatagatgcagtagatgaagtggagggaaaacaaggagtaaatatccaattttgtcc |
35204633 |
T |
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| Q |
102 |
atagaattgtaagaccgtaacaactaaattcatcacattgttaatattctaaaatgggtcgacattgcaaaatattaatcaaattcgtctccacatcttg |
201 |
Q |
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| T |
35204632 |
atagaattgtaagaccgtaacaactaaattcatcacattgttaatattttaaaatgggtcgacattgcaaaatattaatcaaattcgtctccacatcttg |
35204533 |
T |
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| Q |
202 |
annnnnnncaaccaaatttctttaaaacttctataagtatcaatggagagacgaatttaattaatattttaccattcacggaacattctaaaattataat |
301 |
Q |
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| T |
35204532 |
atttttttcaatcaaatttctttaaaacttctataagtatcaatggagagacgaatttaattaatattttgccattcacggaacattctaaaattataat |
35204433 |
T |
|
| Q |
302 |
cccctaaaaaagaaattataatatatagaactaggttaatatacagtcccacattttcaatannnnnnnnnggataattgttaaaagatagagtnnnnnn |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
35204432 |
cccctaaaaaagaaattataatatatagaactaggttaatatacagtcccacattttcaatatttttttttggataattgtcaaaagatagagtgaaaaa |
35204333 |
T |
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| Q |
402 |
nnnntgtaataggagtatgaatattggaagttggaaccaagaaaatatatgagtgtttgt |
461 |
Q |
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| T |
35204332 |
aaaatgtaataggagtatgaatattggaagttggaaccaagaaaatatatgagtgtttgt |
35204273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 451
Target Start/End: Original strand, 55859306 - 55859351
Alignment:
| Q |
406 |
tgtaataggagtatgaatattggaagttggaaccaagaaaatatat |
451 |
Q |
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| T |
55859306 |
tgtaagaggagtatgaatatttgaaattggaaccaagaaaatatat |
55859351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 451
Target Start/End: Complemental strand, 3822721 - 3822676
Alignment:
| Q |
406 |
tgtaataggagtatgaatattggaagttggaaccaagaaaatatat |
451 |
Q |
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| T |
3822721 |
tgtaagaggagtatgaatattagaaattggaaccaagaaaatatat |
3822676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 450
Target Start/End: Original strand, 46267293 - 46267337
Alignment:
| Q |
406 |
tgtaataggagtatgaatattggaagttggaaccaagaaaatata |
450 |
Q |
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| T |
46267293 |
tgtaagaggagtatgaatattagaaattggaaccaagaaaatata |
46267337 |
T |
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