View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_high_9 (Length: 396)
Name: NF14351_high_9
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 29253114 - 29252756
Alignment:
| Q |
18 |
tttgctatgtttgatgaaaatcagaagcctggtgcagcaactgaacaacattttggtctcttcaatcctgttggcacgtcacccaaatatattctaagtt |
117 |
Q |
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| T |
29253114 |
tttgctatgtttgatgaaaatcagaagcctggtgcagcaactgaacaacattttggtctcttcaatcctgttggcacgtcacccaaatatattctaagtt |
29253015 |
T |
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| Q |
118 |
tcaacaaataaattgatgaataattgtgtcatgtatgcacatgctgggtatttttgcatgttccccactctatatttatgcccacgttttccattgaaag |
217 |
Q |
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| T |
29253014 |
tcaacaaataaattgatgaataattgtgtcatgtatgcacatgctgggtatgtttgcatgttctccactctatatttatgcccacgttttccattgaaag |
29252915 |
T |
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| Q |
218 |
cctatttaccggaataagggataatttgctttctacaaatttatttctacaatgtggtcgaactccattataacaatgtctggaataaggctagagttgg |
317 |
Q |
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| T |
29252914 |
cctatttaccggaataagggataatttgctttctacaaatttatttctacaatgtggtcgaactccattataacaatatctggaataaggctagagtcgg |
29252815 |
T |
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| Q |
318 |
atcattaaaccataaagaacttgcagagagtaaataaagtgaggagagaacgacatgatat |
378 |
Q |
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| T |
29252814 |
atcattaaaccataaagaacttgcagagagtaaataaagt--gtcgagaacgacatgatat |
29252756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 29226020 - 29226089
Alignment:
| Q |
18 |
tttgctatgtttgatgaaaatcagaagcctggtgcagcaactgaacaacattttggtctcttcaatcctg |
87 |
Q |
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| T |
29226020 |
tttgccatgtttgatgaaaatcagaagactggtgcagcaactgaacaacattttggtctctttaatcctg |
29226089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 29241196 - 29241265
Alignment:
| Q |
18 |
tttgctatgtttgatgaaaatcagaagcctggtgcagcaactgaacaacattttggtctcttcaatcctg |
87 |
Q |
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| T |
29241196 |
tttgccatgtttgatgaaaatcagaagactggtgcagcaactgaacaacattttggtctctttaatcctg |
29241265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 29230684 - 29230752
Alignment:
| Q |
18 |
tttgctatgtttgatgaaaatcagaagcctggtgcagcaactgaacaacattttggtctcttcaatcct |
86 |
Q |
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| T |
29230684 |
tttgccatgtttgatgaaaatcagaagactggtgcagcaactgaacaacattttggtctctttaatcct |
29230752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 29251473 - 29251542
Alignment:
| Q |
18 |
tttgctatgtttgatgaaaatcagaagcctggtgcagcaactgaacaacattttggtctcttcaatcctg |
87 |
Q |
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| T |
29251473 |
tttgccatgtttgatgaaaatcagaagactggtgcaacaactgaacaacactatggtctctttaatcctg |
29251542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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