View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_low_10 (Length: 433)
Name: NF14351_low_10
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_10 |
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| [»] scaffold1099 (1 HSPs) |
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Alignment Details
Target: scaffold1099 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: scaffold1099
Description:
Target: scaffold1099; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 199 - 422
Target Start/End: Original strand, 865 - 1088
Alignment:
| Q |
199 |
taatatttaatttactgtacattggaataaatctctatcctccttatgactccataaagcctttgaaaccggttgttggaaaatggttcaaacttccaaa |
298 |
Q |
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| T |
865 |
taatatttaatttactatacattggaataaagctctatcctccttatgactccacaaagcctttgaaaccagttgttggaaaatgcttcaaacttccaaa |
964 |
T |
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| Q |
299 |
acaagtctattagtcactcaaaccaccaaccgcagttgaaagtgtagnnnnnnngtattacctgttccagaattggaatagtatacaacatatacatttg |
398 |
Q |
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| T |
965 |
ccaagtctattagttactcaaaacaccaaccgcagttgaaagtgaagaaaaacagtattacctgttccagaattggaatagtatacaacatatacatttg |
1064 |
T |
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| Q |
399 |
gagaaagtgctcaaatagtctgtg |
422 |
Q |
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| T |
1065 |
gagaaagtgctcaaatagtctgtg |
1088 |
T |
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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 55496170 - 55496234
Alignment:
| Q |
30 |
tacatgctatgaaaattctaattctactcccattcaatacatttatcaacgtaaactttcgaaga |
94 |
Q |
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| T |
55496170 |
tacatactatgaaaattctagttctactcccattcaatacatttatcaacgtaaactttcgaaga |
55496234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 55496274 - 55496325
Alignment:
| Q |
134 |
gaaagattgtataagttgttgatgaaggttttaactaagagattagaaggag |
185 |
Q |
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| T |
55496274 |
gaaagattgtataacttgttgatgaaggttttaactaagagattagaaggag |
55496325 |
T |
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