View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_low_12 (Length: 414)
Name: NF14351_low_12
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33365356 - 33365135
Alignment:
| Q |
1 |
ttgttaccgtatcactttggaatccagagaaacaaaacaaaatgaataaatttctataattaattactaacgaagatgaaaaatgtaaactacattttgc |
100 |
Q |
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| T |
33365356 |
ttgttaccgtatcactttggaatccagagaaacaaaacaaaatgaataaatttctataattaattactaacgaagatgaaaaatgtaaactacattttgc |
33365257 |
T |
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| Q |
101 |
ttacatttcttttagagaagtatatacaattatgttgagttttttgtgtgtgctgaaattaggttaagtttttaaatactt-ggttttttgaaaccgaaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
33365256 |
ttacatttcttttagagaagtatatacaattatgttgagttttttgtgtgtgctgaaattaggttaagtttttaaatacttagtttttttgaaaccgaaa |
33365157 |
T |
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| Q |
200 |
atccttaatagttaattaatgt |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
33365156 |
atccttaatagttaattaatgt |
33365135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 248 - 414
Target Start/End: Complemental strand, 33365108 - 33364942
Alignment:
| Q |
248 |
ccagcatgcacttgatgcaataagcctaagatatcagagtctcaaaattgagttttnnnnnnnntatgttccttgaccactcatgtagttatgcgagttg |
347 |
Q |
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| T |
33365108 |
ccagcatgcacttgatgcaataagcctaagatatcagagtctcaaaattgagttttaaaaaaaatatgttccttgaccactcatgtagttatgcgagttg |
33365009 |
T |
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| Q |
348 |
tacacggtactggagggaggagggttgtacacggaaccggagagaggaaggttgtacatggcactgg |
414 |
Q |
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| T |
33365008 |
tacacggtactggagggaggaaggttgtacacggaaccggagagaggaaggttgtacatggcactgg |
33364942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 33371392 - 33371337
Alignment:
| Q |
61 |
taattactaacgaagatgaaaaatgtaaactacattttgcttacatttcttttagag |
117 |
Q |
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|||||||||| ||||||||||||| ||||||| | ||||||||| |||||||||||| |
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| T |
33371392 |
taattactaatgaagatgaaaaatataaactata-tttgcttacctttcttttagag |
33371337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 368
Target Start/End: Complemental strand, 33364827 - 33364772
Alignment:
| Q |
313 |
atgttccttgaccactcatgtagttatgcgagttgtacacggtactggagggagga |
368 |
Q |
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| T |
33364827 |
atgttccttgaccactgatgcagttatgcgggtggtaggcggtactggagggagga |
33364772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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