View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14351_low_13 (Length: 408)

Name: NF14351_low_13
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14351_low_13
NF14351_low_13
[»] chr1 (3 HSPs)
chr1 (26-391)||(44662424-44662790)
chr1 (159-270)||(44684974-44685083)
chr1 (44-86)||(42919709-42919751)
[»] chr4 (3 HSPs)
chr4 (156-391)||(29339506-29339748)
chr4 (165-391)||(29352668-29352903)
chr4 (43-76)||(1799254-1799287)
[»] chr5 (1 HSPs)
chr5 (45-89)||(1918454-1918498)
[»] scaffold0224 (1 HSPs)
scaffold0224 (44-86)||(18580-18622)
[»] chr8 (2 HSPs)
chr8 (43-72)||(23264820-23264849)
chr8 (43-75)||(36796715-36796747)


Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 26 - 391
Target Start/End: Original strand, 44662424 - 44662790
Alignment:
Q  26 agccggcgaaggtacgatgcttcaaacgatcagattcgaccaccactcaaaatccgataagtca-tctataaatgtcaatcaataagagattgaattaat 124  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  44662424 agccgacgaaggtacgatgcttcaaacgatcagattcgaccaccactcaaaatccgataagtcggtctataaatgtcaatcaataagagattgaattaat 44662523  T
Q  125 tgtctacaaggtattttttggtataaaatagtatctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacatggttatag 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44662524 tgtctacaaggtattttttggtataaaatagtatctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacttggttatag 44662623  T
Q  225 tctgagcatagtgagcaattactgcatccaaattggcatctgtttcacctatggacttcgtgacatcaaggtttgtaagtccaataatgttctcttcatc 324  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44662624 tctgagcatagtgagcaattattgcatccaaattggcatctgtttcacctatggacttcgtgacatcaaggtttgtaagtccaataatgttctcttcatc 44662723  T
Q  325 atgtttctcttctcttgagagcttggcattgactacaaccgttggcaacaattctgcatcaggaatg 391  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44662724 atgtttctcttctcttgagagtttggcattgactacaaccgttggcaacaattctgcatcaggaatg 44662790  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 44684974 - 44685083
Alignment:
Q  159 ctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacatggttatagtctgagcatagtgagcaattactgcatccaaatt 258  Q
    ||||| ||||||||||  |||||||||||| ||||||||||||||| | ||||||| || |||||||||  |||||| ||||||||| ||||||||||||    
T  44684974 ctaaatatagaaaaat--gaagcaccaaaaccctacctaagttacgtaagttgtacttgtttatagtctccgcatagcgagcaattattgcatccaaatt 44685071  T
Q  259 ggcatctgtttc 270  Q
    ||||||| ||||    
T  44685072 ggcatctttttc 44685083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 42919709 - 42919751
Alignment:
Q  44 gcttcaaacgatcagattcgaccaccactcaaaatccgataag 86  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  42919709 gcttcaaacgatcagagtcgcccaccactcaacatccgataag 42919751  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 156 - 391
Target Start/End: Complemental strand, 29339748 - 29339506
Alignment:
Q  156 tatctaaagatagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacatggttatagtctgagcatagtgagcaattactgcatccaa 255  Q
    |||||||||||||||||||   ||||| ||||| || ||||||||| |||| ||||||| || |||||||||   ||||||||| |||||||||||| ||    
T  29339748 tatctaaagatagaaaaatc--aagcatcaaaaacccacctaagttgcgcaagttgtacttgtttatagtctccacatagtgagtaattactgcatctaa 29339651  T
Q  256 attggcatctgtttcacctatggacttcgtgacatcaaggtttgtaagtccaataatgttctcttcat---------catgtttctcttctcttgagagc 346  Q
    ||||||||| |||||||| ||| | |  |||| | ||| ||| ||||||| | |||||| ||||||||         ||||| ||||||||| ||||||     
T  29339650 attggcatcagtttcaccaatgcattgtgtgatagcaatgttggtaagtctattaatgtcctcttcatgaatatttgcatgtctctcttctcctgagagt 29339551  T
Q  347 ttggcattgactacaaccgttggcaacaattctgcatcaggaatg 391  Q
    ||||||||| | ||||| ||||||||||  |||||||||||||||    
T  29339550 ttggcattgccaacaactgttggcaacatctctgcatcaggaatg 29339506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 165 - 391
Target Start/End: Complemental strand, 29352903 - 29352668
Alignment:
Q  165 atagaaaaatatgaagcaccaaaagcctacctaagttacgcatgttgtacatggttatagtctgagcatagtgagcaattactgcatccaaattggcatc 264  Q
    ||||| ||| || ||||| ||||| |||||||||||||| || ||||||  || |||||||||   |||||||||||||||||||||| |||||||||||    
T  29352903 atagagaaaaatcaagcatcaaaaacctacctaagttacacaagttgtatttgtttatagtctccacatagtgagcaattactgcatctaaattggcatc 29352804  T
Q  265 tgtttcacctatggacttcgtgacatcaaggtttgtaagtccaataatgttctcttcat---------catgtttctcttctcttgagagcttggcattg 355  Q
     |||||||| ||| | |  |||| | ||| ||| ||||||| | |||||| ||||||||         ||||| ||||||||  |||||| |||||| ||    
T  29352803 agtttcaccaatgcattgtgtgatagcaatgttggtaagtctattaatgtcctcttcatgaatatttgcatgtctctcttcttctgagagtttggcaatg 29352704  T
Q  356 actacaaccgttggcaacaattctgcatcaggaatg 391  Q
     | ||||| ||||||||||  |||||||||||||||    
T  29352703 ccaacaactgttggcaacatctctgcatcaggaatg 29352668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 1799287 - 1799254
Alignment:
Q  43 tgcttcaaacgatcagattcgaccaccactcaaa 76  Q
    |||||||||||||||| |||||||||||||||||    
T  1799287 tgcttcaaacgatcagcttcgaccaccactcaaa 1799254  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 1918498 - 1918454
Alignment:
Q  45 cttcaaacgatcagattcgaccaccactcaaaatccgataagtca 89  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||    
T  1918498 cttcaaacgatcagattcgaccaccactcaacatccgatatgtca 1918454  T

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Target: scaffold0224 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 18622 - 18580
Alignment:
Q  44 gcttcaaacgatcagattcgaccaccactcaaaatccgataag 86  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  18622 gcttcaaacgatcagagtcgcccaccactcaacatccgataag 18580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 23264849 - 23264820
Alignment:
Q  43 tgcttcaaacgatcagattcgaccaccact 72  Q
    ||||||||||||||||||||||||||||||    
T  23264849 tgcttcaaacgatcagattcgaccaccact 23264820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 36796747 - 36796715
Alignment:
Q  43 tgcttcaaacgatcagattcgaccaccactcaa 75  Q
    |||||||||||||||||| ||||||||||||||    
T  36796747 tgcttcaaacgatcagatgcgaccaccactcaa 36796715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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