View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14351_low_15 (Length: 394)

Name: NF14351_low_15
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14351_low_15
NF14351_low_15
[»] chr7 (14 HSPs)
chr7 (12-216)||(46516904-46517108)
chr7 (221-391)||(46512076-46512246)
chr7 (222-382)||(46165564-46165724)
chr7 (15-216)||(46524611-46524812)
chr7 (12-205)||(46322744-46322937)
chr7 (15-212)||(46479119-46479316)
chr7 (15-212)||(46520549-46520746)
chr7 (15-205)||(46532175-46532365)
chr7 (18-201)||(46326455-46326638)
chr7 (15-205)||(46490328-46490518)
chr7 (12-201)||(46494630-46494819)
chr7 (233-382)||(5959810-5959956)
chr7 (235-381)||(28214756-28214902)
chr7 (236-382)||(4127828-4127971)
[»] chr1 (6 HSPs)
chr1 (221-382)||(19870612-19870773)
chr1 (221-382)||(48987147-48987308)
chr1 (268-382)||(25488280-25488394)
chr1 (235-381)||(8146150-8146296)
chr1 (221-269)||(25487778-25487826)
chr1 (12-65)||(37152139-37152192)
[»] scaffold0402 (1 HSPs)
scaffold0402 (233-382)||(14151-14297)
[»] chr6 (1 HSPs)
chr6 (233-382)||(6827665-6827811)
[»] scaffold0522 (1 HSPs)
scaffold0522 (235-381)||(5632-5778)
[»] chr8 (1 HSPs)
chr8 (233-382)||(17939646-17939792)
[»] chr4 (2 HSPs)
chr4 (233-382)||(36383408-36383554)
chr4 (12-65)||(88038-88091)
[»] chr3 (3 HSPs)
chr3 (235-362)||(49572908-49573035)
chr3 (235-362)||(3904846-3904973)
chr3 (117-205)||(7475308-7475396)
[»] chr5 (1 HSPs)
chr5 (235-382)||(5358368-5358515)
[»] scaffold0137 (1 HSPs)
scaffold0137 (235-362)||(11701-11828)
[»] chr2 (1 HSPs)
chr2 (233-307)||(29760549-29760623)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 46517108 - 46516904
Alignment:
Q  12 gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46517108 gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatct 46517009  T
Q  112 ggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46517008 ggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacactgatgctcccacttc 46516909  T
Q  212 agtta 216  Q
    |||||    
T  46516908 agtta 46516904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 221 - 391
Target Start/End: Complemental strand, 46512246 - 46512076
Alignment:
Q  221 caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacc 320  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46512246 caggatgcacaacgcgtatgattatttcacttgatcgaaagatagggaaatataagtttgttgactttgaagctcaacataaccaccttcttcttccacc 46512147  T
Q  321 tgagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattgagcatgagt 391  Q
    |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  46512146 tgagtatgttcatatgattcgctcccatcgacacatatttgaggcacaagcatcacaaattgagcatgagt 46512076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 222 - 382
Target Start/End: Original strand, 46165564 - 46165724
Alignment:
Q  222 aggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacct 321  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  46165564 aggatgcacagcgtgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctggttccacct 46165663  T
Q  322 gagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg 382  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  46165664 gagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcacaaattg 46165724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 46524812 - 46524611
Alignment:
Q  15 cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt 114  Q
    ||||||| |||||||||||||||||||||||||||| | || |||||||| |||||||||||  | || |||||||||||||| || || ||| ||||||    
T  46524812 cacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt 46524713  T
Q  115 actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttcagt 214  Q
    | |||||||||||||||||||| |||||||||||||| ||||||||  | || ||||| |||||||||||||| |||||||| ||||||||  |||||||    
T  46524712 attcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagt 46524613  T
Q  215 ta 216  Q
    ||    
T  46524612 ta 46524611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 46322744 - 46322937
Alignment:
Q  12 gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatct 111  Q
    |||||||||| |||||||||||||||||||||||||||| | || |||||||| |||||||||||  | || ||||||||||| || ||||||||| |||    
T  46322744 gagcacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactct 46322843  T
Q  112 ggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc 205  Q
    ||||||| ||||||||||||||||  |||||| |||| || ||||||||| |||| ||||| ||||| |||||||| ||||||||||| |||||    
T  46322844 ggtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctcc 46322937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 46479316 - 46479119
Alignment:
Q  15 cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt 114  Q
    |||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| || || |||||| ||||||    
T  46479316 cacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggt 46479217  T
Q  115 actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttca 212  Q
    | ||||||||||||||||||| ||||||  ||||||| || |||||  | || ||||||||||| ||||||||||| ||||| ||||||||| |||||    
T  46479216 attcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttca 46479119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 46520746 - 46520549
Alignment:
Q  15 cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt 114  Q
    |||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| || || |||||| ||||||    
T  46520746 cacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctggt 46520647  T
Q  115 actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcccacttca 212  Q
    | ||||||||||||||||||| ||||||  ||||||| || |||||  | || ||||||||||| ||||||||||| ||||| ||||||||| |||||    
T  46520646 attcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttca 46520549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 46532365 - 46532175
Alignment:
Q  15 cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt 114  Q
    |||||||||||||| ||||||||||||||||||||| | || || |||||||||||||||||  | || |||||||||||||| || || ||| ||||||    
T  46532365 cacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctggt 46532266  T
Q  115 actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc 205  Q
    | |||||||||||||| ||||| |||||  ||||||| || |||||| |||| ||||||||||| |||||||| |||||||| || |||||    
T  46532265 attcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacaccgaggctcc 46532175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 46326455 - 46326638
Alignment:
Q  18 agaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtact 117  Q
    ||||||||||||||||||||||||||||||||| | || |||||||| |||||||||||  | || ||||||||||| || ||||||||| |||||||||    
T  46326455 agaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtact 46326554  T
Q  118 catggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatg 201  Q
    | ||||||||||||||||  |||||| | ||||| || |||||  | || ||||| |||||||||||||| |||||||| ||||    
T  46326555 cttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacacagatg 46326638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 46490518 - 46490328
Alignment:
Q  15 cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt 114  Q
    ||||||||||||||||||||||| |||||||||||| | || |||||||| |||||||||||  | ||  ||||||||||||| || |||||| ||||||    
T  46490518 cacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctggt 46490419  T
Q  115 actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc 205  Q
    | ||||||||||||||||||  ||||||  ||||||| || |||||| | || ||||||||||||||||| || || ||||| ||||||||    
T  46490418 attcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctcc 46490328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 46494819 - 46494630
Alignment:
Q  12 gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatct 111  Q
    ||||||||||||||||||||||||||||||||||||||| | || || |||||||||||||||||  | ||  |||||||||| || || |||||| |||    
T  46494819 gagcacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacggattccctgaactct 46494720  T
Q  112 ggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatg 201  Q
    ||||||| ||||||||||||||||  |||||| |||| || || |||||  | |||||||| ||||| ||||| || || || |||||||    
T  46494719 ggtactcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgatactgatg 46494630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 382
Target Start/End: Complemental strand, 5959956 - 5959810
Alignment:
Q  233 cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca 332  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||  |||| |||||||||||   ||||    ||||||| |||||||    
T  5959956 cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccacgaacttca---acctgagcatgttca 5959860  T
Q  333 tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg 382  Q
    |||||||||||| ||||||| ||||||||||  |||||||||||||||||    
T  5959859 tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg 5959810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 235 - 381
Target Start/End: Complemental strand, 28214902 - 28214756
Alignment:
Q  235 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata 334  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |    |||| |||||||||||||  || |  ||||||||||| |    
T  28214902 cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaaccgcaagagtatgttcaca 28214803  T
Q  335 tgattcgctcccatcgacacatatctgatgaacaagcatcacaaatt 381  Q
    |||||||||| ||||| | ||||||||| | ||||||||||||||||    
T  28214802 tgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt 28214756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 236 - 382
Target Start/End: Original strand, 4127828 - 4127971
Alignment:
Q  236 gtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcatat 335  Q
    |||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||  |||| |||||||||||      |||| ||||||| ||||||||||    
T  4127828 gtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac---gaacttcaacctgagcatgttcatat 4127924  T
Q  336 gattcgctcccatcgacacatatctgatgaacaagcatcacaaattg 382  Q
    ||||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  4127925 gattcactctcatcgacgcatatctgatacacaagcatcacaaattg 4127971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 221 - 382
Target Start/End: Original strand, 19870612 - 19870773
Alignment:
Q  221 caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacc 320  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  19870612 caggatgcacaacacgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctggttccacc 19870711  T
Q  321 tgagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg 382  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||    
T  19870712 tgagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcaaaaattg 19870773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 221 - 382
Target Start/End: Original strand, 48987147 - 48987308
Alignment:
Q  221 caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacc 320  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  48987147 caggatgcacagcgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaatctcaacataaccaccttctggttccacc 48987246  T
Q  321 tgagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg 382  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  48987247 tgagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcacaaattg 48987308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 268 - 382
Target Start/End: Original strand, 25488280 - 25488394
Alignment:
Q  268 aaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcatatgattcgctcccatcgacacatatctgatgaac 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  25488280 aaatataaggttgttgactttgaagctcaacataaccaccttctggttccacctgagtatgttcatatgattcgctcccatcgacacatatctgaggcac 25488379  T
Q  368 aagcatcacaaattg 382  Q
    |||||||||||||||    
T  25488380 aagcatcacaaattg 25488394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 235 - 381
Target Start/End: Complemental strand, 8146296 - 8146150
Alignment:
Q  235 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata 334  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |    |||| |||||||||||||  || |  ||||||||||| |    
T  8146296 cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaaccgcaagagtatgttcaca 8146197  T
Q  335 tgattcgctcccatcgacacatatctgatgaacaagcatcacaaatt 381  Q
    |||||||||| ||||| | ||||||||| | ||||||||||||||||    
T  8146196 tgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt 8146150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 25487826 - 25487778
Alignment:
Q  221 caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaa 269  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25487826 caggatgcacagcgcgtatggttatttcacttgatcgaaagatagggaa 25487778  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 37152192 - 37152139
Alignment:
Q  12 gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaagga 65  Q
    |||||||||| ||| ||||| ||||| || ||||||||||| ||||||||||||    
T  37152192 gagcacagaatagtagaagtaaatggcattaaaatgcatgttgcagagaaagga 37152139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 382
Target Start/End: Complemental strand, 14297 - 14151
Alignment:
Q  233 cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca 332  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||  |||| |||||||||||   ||||    ||||||| |||||||    
T  14297 cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccacgaacttca---acctgagcatgttca 14201  T
Q  333 tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg 382  Q
    |||||||||||| ||||||| ||||||||||  |||||||||||||||||    
T  14200 tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg 14151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 382
Target Start/End: Original strand, 6827665 - 6827811
Alignment:
Q  233 cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca 332  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||  |||| |||||||||||      |||| ||||||| |||||||    
T  6827665 cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagcttaacataaccac---gaacttcaacctgagcatgttca 6827761  T
Q  333 tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg 382  Q
    |||||||||||| ||||||| ||||||||||  |||||||||||||||||    
T  6827762 tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg 6827811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 235 - 381
Target Start/End: Original strand, 5632 - 5778
Alignment:
Q  235 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata 334  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |    |||| |||||||||||||  || |  ||||||||||| |    
T  5632 cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaaccgcaagagtatgttcaca 5731  T
Q  335 tgattcgctcccatcgacacatatctgatgaacaagcatcacaaatt 381  Q
    |||||||||| ||||| | ||||||||| | ||||||||||||||||    
T  5732 tgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt 5778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 233 - 382
Target Start/End: Original strand, 17939646 - 17939792
Alignment:
Q  233 cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca 332  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||  |||| |||||||||||      |||| ||||||| |||||||    
T  17939646 cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac---gaacttcaacctgagcatgttca 17939742  T
Q  333 tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg 382  Q
    |||||||| ||| ||||||| ||||||||||  |||||||||||||||||    
T  17939743 tatgattcactctcatcgacgcatatctgatacacaagcatcacaaattg 17939792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 233 - 382
Target Start/End: Original strand, 36383408 - 36383554
Alignment:
Q  233 cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttca 332  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||  |||| |||||||||||      |||| || |||| |||||||    
T  36383408 cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac---gaacttcaacatgagcatgttca 36383504  T
Q  333 tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg 382  Q
    |||||||||||| ||||||| ||||||||||  |||||||||||||||||    
T  36383505 tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg 36383554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 88038 - 88091
Alignment:
Q  12 gagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaagga 65  Q
    |||||||||| ||| ||||| ||||| || ||||||||||| ||||||||||||    
T  88038 gagcacagaatagtagaagtaaatggcattaaaatgcatgttgcagagaaagga 88091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 235 - 362
Target Start/End: Complemental strand, 49573035 - 49572908
Alignment:
Q  235 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata 334  Q
    ||||||||||||||||||||||| ||||| || ||||| |||||| ||||||||| |||   |||||| ||||||||||| ||| ||||||||||| |||    
T  49573035 cgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactttgtagcgggacataatcaccttcttctgccagctgagtatgtttata 49572936  T
Q  335 tgattcgctcccatcgacacatatctga 362  Q
    |||||||||| ||| |||||||||||||    
T  49572935 tgattcgctctcattgacacatatctga 49572908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 362
Target Start/End: Original strand, 3904846 - 3904973
Alignment:
Q  235 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata 334  Q
    ||||||||||||||||||||||||||||| || || || |||||||||||||||| |||||||||||| || ||||||   || || | |||| ||||||    
T  3904846 cgtatggttatttcacttgatcgaaagattggtaagtacaaggttgttgactttgtagctcaacataatcatcttcttgaaccgccagggtattttcata 3904945  T
Q  335 tgattcgctcccatcgacacatatctga 362  Q
        ||||||||||||||| ||||||||    
T  3904946 ctcctcgctcccatcgacaaatatctga 3904973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 7475308 - 7475396
Alignment:
Q  117 tcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggctacggtgacactgatgctcc 205  Q
    |||||||||||||||||| | |||||||||||||| |||||||    ||||||| | |||||||||||||| |||||||| ||| ||||    
T  7475308 tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctcc 7475396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 5358515 - 5358368
Alignment:
Q  235 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata 334  Q
    ||||||||||||||||||| ||| ||||| || ||||| |||||| |||||| || |||   |||||| ||||||||||| ||| ||||||||||| |||    
T  5358515 cgtatggttatttcacttgttcggaagattggaaaatacaaggttattgactctgtagcgagacataatcaccttcttctgccagctgagtatgtttata 5358416  T
Q  335 tgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg 382  Q
    ||||| |||| |||||||||||||||||   ||||||||| |||||||    
T  5358415 tgatttgctctcatcgacacatatctgagtcacaagcatcccaaattg 5358368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 362
Target Start/End: Original strand, 11701 - 11828
Alignment:
Q  235 cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttcttcttccacctgagtatgttcata 334  Q
    ||||||||||||||||||||||||||||| || || || |||||||||||||||| |||||||||||| || ||||||   || || | |||| ||||||    
T  11701 cgtatggttatttcacttgatcgaaagattggtaagtacaaggttgttgactttgtagctcaacataatcatcttcttgaaccgccagggtattttcata 11800  T
Q  335 tgattcgctcccatcgacacatatctga 362  Q
        ||||||||||||||| ||||||||    
T  11801 ctcctcgctcccatcgacaaatatctga 11828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 29760549 - 29760623
Alignment:
Q  233 cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccacc 307  Q
    ||||||||||||||||||||||||  ||||||| ||||||||| ||||||||||||  |||| ||||||||||||    
T  29760549 cgcgtatggttatttcacttgatcagaagatagagaaatataaagttgttgactttatagctgaacataaccacc 29760623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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