View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_low_17 (Length: 337)
Name: NF14351_low_17
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 320
Target Start/End: Original strand, 16113683 - 16113990
Alignment:
| Q |
10 |
tccaagaatatgcaaatagtgtaatctctctgagctaaaatgtatgaatagcctcaggtttttcgtttctggctgttggtcggttccaggcttttgtggt |
109 |
Q |
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| T |
16113683 |
tccaagtatatgcaaatagtgtaatctctctgagctaaaatgtatgaatagcctcaggtttttcgtttctagctgttggtcggttccaggcttttgtggt |
16113782 |
T |
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| Q |
110 |
ctgtcgcattttctgcttggtttaggcttgttttgttttgctgtcttgacagttggggttctgctatatcagtccctgttgtaattgttttctgctgtct |
209 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16113783 |
ctgtcgcattttctgcttggtttaggcttgttt-gttttgctgtcttgacagttggggttctgctatatcagtccctgttgtaattgttttctgctgtct |
16113881 |
T |
|
| Q |
210 |
gcgagtttttgttgtgcttcttgcacgtgctcgttgttaataaatttgctgattctacaaagaagaaaaaatctaacactgtctccatttatttagtttt |
309 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
16113882 |
gcgagtttttgttgtgcttcttggatgtgctcgttgttaataaatttgctgattctacaaaga--aaaaaatataacactgtctccatttatttagtttt |
16113979 |
T |
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| Q |
310 |
ggtgcgatatt |
320 |
Q |
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||||||||||| |
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| T |
16113980 |
ggtgcgatatt |
16113990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 109 - 266
Target Start/End: Complemental strand, 38176062 - 38175907
Alignment:
| Q |
109 |
tctgtcgcattttct-gcttggtttaggcttgttttgttttgctgtcttgacagttggggttctgctatatcagtccctgttgtaattgttttctgctgt |
207 |
Q |
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| T |
38176062 |
tctgtcgcatttttttgcttggttg-ggcttgttttgttttgctgttatgacagttggggttttgctatatcggtccctgttgtaaatgttttctggtgt |
38175964 |
T |
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| Q |
208 |
ctgcgagtttttgttgtgcttcttgcacgtgctcgttgttaataaatttgctgattcta |
266 |
Q |
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| T |
38175963 |
ctgcgagttttagttgtgcttc--gcacgcgctcgtttttaataaatttgctgattcta |
38175907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 39478734 - 39478691
Alignment:
| Q |
10 |
tccaagaatatgcaaatagtgtaatctctctgagctaaaatgta |
53 |
Q |
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| T |
39478734 |
tccaagtatatgcaaatagtgtaatctctctgagttaaaatgta |
39478691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 109 - 266
Target Start/End: Original strand, 49962922 - 49963075
Alignment:
| Q |
109 |
tctgtcgcattttct-gcttggtttaggcttgttttgttttgctgtcttgacagttggggttctgctatatcagtccctgttgtaattgttttctgctgt |
207 |
Q |
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||||||||||||| | |||||||| |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
49962922 |
tctgtcgcatttttttgcttggttg-ggcttgttttgttttgctgttatgacagctggggttctgctatatcggtccctgttgtaattgttttctggtgt |
49963020 |
T |
|
| Q |
208 |
ctgcgagtttttgttgtgcttcttgcacgtgctcgttgttaataaatttgctgattcta |
266 |
Q |
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| T |
49963021 |
c--cgagttttagttgtgcttc--gcccgcgctcgtttttaataaatttgctgattcta |
49963075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 6457538 - 6457445
Alignment:
| Q |
173 |
ctatatcagtccctgttgtaattgttttctgctgtctgcgagtttttgttgtgcttcttgcacgtgctcgttgttaataaatttgctgattcta |
266 |
Q |
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| T |
6457538 |
ctatataagtccctgttgtaattgttttctgctgtccgcgagttttagttgtgcttcttgcacgcgctcgttgttaataaatctgttgattcta |
6457445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 6759310 - 6759403
Alignment:
| Q |
173 |
ctatatcagtccctgttgtaattgttttctgctgtctgcgagtttttgttgtgcttcttgcacgtgctcgttgttaataaatttgctgattcta |
266 |
Q |
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| T |
6759310 |
ctatataagtccctgttgtaattgttttctgctgtccgcgagttttagttgtgcttcttgcacgcgctcgttgttaataaatctgttgattcta |
6759403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 42632444 - 42632352
Alignment:
| Q |
109 |
tctgtcgcattttc-tgcttggtttaggcttgttttgttttgctgtcttgacagttggggttctgctatatcagtccctgttgtaattgttttc |
201 |
Q |
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||||||||||||| ||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42632444 |
tctgtcgcatttttatgcttggttg-ggcttgttttgttttactgttatgacagttggggttctgctatatcagtccctgttgtaattgttttc |
42632352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 16210568 - 16210656
Alignment:
| Q |
168 |
ttctgctatatcagtccctgttgtaattgttttctgctgtctgcgagtttttgttgtgcttcttgcacgtgctcgttgttaataaattt |
256 |
Q |
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|||||||||||||| ||| ||||||||||| |||||| | ||||||||| |||||| |||||||||| |||||||| ||||||||| |
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| T |
16210568 |
ttctgctatatcagagccttttgtaattgttagctgctggccgcgagttttagttgtgtttcttgcacgctctcgttgtgaataaattt |
16210656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 5038424 - 5038478
Alignment:
| Q |
213 |
agtttttgttgtgcttcttgcacgtgctcgttgttaat-aaatttgctgattcta |
266 |
Q |
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||||||||||||| ||||||||| ||||||||| ||| |||||||||||||||| |
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| T |
5038424 |
agtttttgttgtgtttcttgcacacgctcgttgtgaataaaatttgctgattcta |
5038478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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