View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_low_18 (Length: 330)
Name: NF14351_low_18
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 42770882 - 42770571
Alignment:
| Q |
1 |
aaaaaagttgaagtgaaggggaagagtaaaaaaggttatacagctgaaggtgagaaagtcgaagaagaacattcaagaagcttatgtggctgaaggtgaa |
100 |
Q |
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| T |
42770882 |
aaaaaagttgaagtgaaggggaaaagtaaaaaaggttatacagctgaaggtgagaaagtcgaagaagaacattcaagaaacttatgtggctgaaggtgaa |
42770783 |
T |
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| Q |
101 |
atctcttagaatgtttcacaagattttgtggttgaaggtgagaaagcggagaagaaagctctaagaatgttaaataaggtatggctaaaagtgaaatctt |
200 |
Q |
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| T |
42770782 |
atctcttagaatgtttcacaagattttgtggttgaaggtgagaaagcggagaagaaagctctaagaatgttaaataaggtatggctgaaagtgaaatctt |
42770683 |
T |
|
| Q |
201 |
tgaggcggttccacaaggttctgcggctgaagatgagaaagcagaagaaaatttttaagaacattcaaggtcacatggctgaaggtgaaatctaggagga |
300 |
Q |
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| T |
42770682 |
tgaggcggttccacaaggttctgcggctgaagatgagaaagcagaagaaaatttttaagaacattcaaggtcacatggctgaaggtgaaatctaggagga |
42770583 |
T |
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| Q |
301 |
gaaggtacagct |
312 |
Q |
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| T |
42770582 |
gaaggtacagct |
42770571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 42772323 - 42772437
Alignment:
| Q |
131 |
gttgaaggtgagaaagcgga-gaagaaagctctaagaatgttaaataaggta---tggctaaaagtgaaatctttgaggcggttccacaaggttctgcgg |
226 |
Q |
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| T |
42772323 |
gttgaaggtgggaaagcggaagaagaaaactctaagaacgttaaagaaggttccgtggctgaaggtgaaatctttgagacggttccagaaggttttgcgg |
42772422 |
T |
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| Q |
227 |
ctgaagatgagaaag |
241 |
Q |
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| T |
42772423 |
ccgaaggtgagaaag |
42772437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 42770110 - 42770219
Alignment:
| Q |
72 |
ttcaagaagcttatgtggctgaaggtgaaatctcttagaatgtttcacaagattttgtggttgaaggtgagaaagcgg-agaagaaagctctaagaatgt |
170 |
Q |
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| T |
42770110 |
ttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgt |
42770209 |
T |
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| Q |
171 |
taaataaggt |
180 |
Q |
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| || ||||| |
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| T |
42770210 |
tcaagaaggt |
42770219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 42773014 - 42772977
Alignment:
| Q |
65 |
aagaacattcaagaagcttatgtggctgaaggtgaaat |
102 |
Q |
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| T |
42773014 |
aagaacattcaagaagcttttgtggctgaaggtgaaat |
42772977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 42772425 - 42772480
Alignment:
| Q |
46 |
gaaggtgagaaagtcgaagaagaacattcaagaagcttatgtggctgaaggtgaaa |
101 |
Q |
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| T |
42772425 |
gaaggtgagaaagaggaagaagaaaactcaagaaggttctgtggctgaaggtgaaa |
42772480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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