View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_low_19 (Length: 330)
Name: NF14351_low_19
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 16113713 - 16113377
Alignment:
| Q |
1 |
agagagattacactatttgcatatacttggaatatttaaactacattaaaatattaatcagaagcatatattattattaaaccttagccatggataaaaa |
100 |
Q |
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| T |
16113713 |
agagagattacactatttgcatatacttggaaaatttaaactacattaaaatattaatcagaagcatatattataattaaaccttagccatggataaaaa |
16113614 |
T |
|
| Q |
101 |
cacaagagtttttcgcatttaagagatttataaaatgttcaagggtgaactgaaaactatacaactttaacatgattaaaaaatatttt----------- |
189 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16113613 |
cacaagagttttttgcatttaagagatttataaaatgtacaagggtgaactgaaaactatacaactttaacatgattaaaaaatatttttaatgaattat |
16113514 |
T |
|
| Q |
190 |
--------ttaaaagaagcagttgaaatgaannnnnnncaataaactagatgaatgagaacacttactcgattctttttcctcgtcaatatgnnnnnnna |
281 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
16113513 |
aaacatcattaaaagaagcagttgaaatgaatttttttcaataaactagatgaatgagaacacttacccgattctttttcctcgtcaatatgttttttaa |
16113414 |
T |
|
| Q |
282 |
atgcttcagagtgtttccctgttaactcaggctcctt |
318 |
Q |
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| T |
16113413 |
atgcttcagagtgtttccctgttaactcaggctcctt |
16113377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 39478704 - 39478890
Alignment:
| Q |
1 |
agagagattacactatttgcatatacttggaatatttaaactacattaaaatatta----atcagaagca---tatattattattaaaccttagccatgg |
93 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||| | ||||| |||||||||||||| ||| |
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| T |
39478704 |
agagagattacactatttgcatatacttggaaaatttaaactacattaaaatactaatctatcattagcacagtggattataattaaaccttagccgtgg |
39478803 |
T |
|
| Q |
94 |
ataaaaac-acaagag-tttttcgcatttaagagatttataaaatgttcaagggtgaactgaaaactatacaactttaacatgattaaaaaa |
183 |
Q |
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|||||||| ||||| ||||| |||||||||||||| |||||||||||||||| ||||||| ||||| ||||||||||||| ||||| |
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| T |
39478804 |
ataaaaacgtaaagagtttttttgcatttaagagattcataaaatgttcaaggg-----tgaaaaccatacagctttaacatgatttaaaaa |
39478890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 39468709 - 39468635
Alignment:
| Q |
76 |
attaaaccttagccatggataaaaacacaagag-tttttcgcatttaagagatttataaaatgttcaagggtgaa |
149 |
Q |
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||||||||||||||||||||||||||||||| | ||||| | |||||||||||| |||||||||||||||||||| |
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| T |
39468709 |
attaaaccttagccatggataaaaacacaagcgtttttttggatttaagagattcataaaatgttcaagggtgaa |
39468635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 39397475 - 39397561
Alignment:
| Q |
63 |
agcatatattattattaaaccttagccatggataaaaacacaagagtttttcgcatttaagagatttataaaatgttcaagggtgaa |
149 |
Q |
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|||||||||||| || |||||||||||||| |||||||| ||||||||||| |||| ||||||||| ||| || ||||||| ||||| |
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| T |
39397475 |
agcatatattataataaaaccttagccatgaataaaaacgcaagagttttttgcatataagagattcatagaaggttcaagagtgaa |
39397561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 39381110 - 39381192
Alignment:
| Q |
68 |
atattattattaaaccttagccatggataaaaa-cacaagagtttttcgcatttaagagatttataaaatgttcaagggtgaa |
149 |
Q |
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||||||| ||||| ||||||||||| ||||||| | ||| ||||||||| | ||| |||||| |||||||||||||||||||| |
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| T |
39381110 |
atattataattaagccttagccatgaataaaaaacgcaacagtttttcgtacttacgagattcataaaatgttcaagggtgaa |
39381192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 39138045 - 39137997
Alignment:
| Q |
221 |
aataaactagatgaatgagaacacttactcgattctttttcctcgtcaa |
269 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||||||||||| |||| |
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| T |
39138045 |
aataaactagatgaataagaactcttacccgattctttttcctcatcaa |
39137997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 44624386 - 44624327
Alignment:
| Q |
90 |
atggataaaaacacaagagtttttcgcatttaagagatttataaaatgttcaagggtgaa |
149 |
Q |
| |
|
||||||||||| |||||||||||| || |||||||||| |||||||||||||||||| |
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| T |
44624386 |
atggataaaaatacaagagtttttttcacttaagagattctaaaaatgttcaagggtgaa |
44624327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 39370284 - 39370231
Alignment:
| Q |
220 |
caataaactagatgaatgagaacacttactcgattctttttcctcgtcaatatg |
273 |
Q |
| |
|
||||||||||||||||| |||||| |||| | | |||||||||||| ||||||| |
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|
| T |
39370284 |
caataaactagatgaataagaacatttacccaaatctttttcctcggcaatatg |
39370231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 44729813 - 44729746
Alignment:
| Q |
76 |
attaaaccttagccatggataaaaacacaagagtttttcgcatttaagagatttataaaatgttcaag |
143 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |
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| T |
44729813 |
attaaaccttagtaatggataaaaatgcaagagttttttgcatttaagagattcttaaaatgttcaag |
44729746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 44950953 - 44951021
Alignment:
| Q |
76 |
attaaaccttagccatggataaaaacacaagagtttttc-gcatttaagagatttataaaatgttcaag |
143 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |
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| T |
44950953 |
attaaaccttagtaatggataaaaatgcaagagtttttttgcatttaagagattcttaaaatgttcaag |
44951021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 33561419 - 33561352
Alignment:
| Q |
79 |
aaaccttagccatggataaaaacacaagagtttttcgcatttaagagatttataaaatgttcaagggtgaa |
149 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| || ||||||||| |||||||||||||||||||| |
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|
| T |
33561419 |
aaaccttagccatggataaaaacacgagattttt---cacttaagagatacataaaatgttcaagggtgaa |
33561352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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