View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14351_low_2 (Length: 715)
Name: NF14351_low_2
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 169 - 698
Target Start/End: Original strand, 2337029 - 2337564
Alignment:
| Q |
169 |
atcttttatgtttcaatcaacaccattccctaccgatgagagttctaaaaatctacgacattttatttttcaatcacctaacgctgaaccgaaatcacca |
268 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2337029 |
atcttttatggtt-aatcaacaccattccctaccgatgagagttctcaaaatctacgacattttatttttcaatcacctaacgctgaaccgaaatcatca |
2337127 |
T |
|
| Q |
269 |
attggatccactgttgattgttcgaagtcgtgaagaagggtataagcgattgttcaaatgactacttctctgaaaatcctgtatacacggaggctcaatt |
368 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2337128 |
attagatccactgttgattgttcgaagtcgtgaagaagggcataaccgattgttcaaatgactacttctctgaaaatcctgtatacacggaggctcaatt |
2337227 |
T |
|
| Q |
369 |
ttgacaaaggttctgtatgtgaagacatgtgtcccttcacattgttgaagcccttggtaatcatgatgagtactttcagagaacgaatgatatagtgggt |
468 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2337228 |
ttgacaaaggttatgtatgtgaagacatgtgttccttcacatcgttgaagcccttggtaatcatgatgagtactttcagaaaacgaatgatatagtgggt |
2337327 |
T |
|
| Q |
469 |
agaacatgacttgaagaagtgcatcgttgctcttcgtatacta--------atatacatatagatcaccaactaacagtgtggatgactatgtacgtatc |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2337328 |
agaacatgacttgaagaagtgcatcgttgctcttagtatactaacatatatatatatatatagatcaccaactaacagtgtggatgactatgtacgtatc |
2337427 |
T |
|
| Q |
561 |
tgtgaaagcacaacattgtcgtgctcagacaggtacgcaatgggcgcgggcacaatttttggtgatcagtacatgagaaggcaaaacaatgaagacattg |
660 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
2337428 |
tgtgaaagcacaacattgccatgcttagacaggttcgcaatgggtgcgggcacaatttttggtgatcggtacatgagaaggccaaacaatgaagacattg |
2337527 |
T |
|
| Q |
661 |
cacgtatactacaaatgatatatttggtctatactatg |
698 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2337528 |
ca-gtatactacaaataatatatttggtctatactatg |
2337564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 2336820 - 2337000
Alignment:
| Q |
17 |
atatttgcattttcttttctcaaatggatcccaactagtggaactctactataactatatgcaaaccccaatcgatgatggttctcgaaatttttaatct |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
2336820 |
atatttgcattttcttttgtcaaatggatcccaactagtggaactctactataattatatgcaaaccccaatcgatgatggttctcgatattttcaatct |
2336919 |
T |
|
| Q |
117 |
ttgacgtatctacgaccaccactccctaaagtgacagttcttaatatcccaaatcttttatgtttcaatcaacaccattcc |
197 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2336920 |
ttgacgtatctacgaccaccactccttaaagtgacagttcttaatatcccaaatcttttatgtttcaatcaccaccattcc |
2337000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 290 - 665
Target Start/End: Complemental strand, 29265008 - 29264628
Alignment:
| Q |
290 |
tcgaagtcgtgaagaagggtataagcgattgttcaaatgactacttctctgaaaatcctgtatacacggaggctcaattttgacaaaggttctgtatgtg |
389 |
Q |
| |
|
||||||||||||||||||| |||| | |||||| || |||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||| | |
|
|
| T |
29265008 |
tcgaagtcgtgaagaagggcataaccaattgtttaa-tgactacttctctgaaaatcctgtatacacagaggctcaatttcgacgaaggttccgtatgcg |
29264910 |
T |
|
| Q |
390 |
aagacatgtgtcccttcacattgttgaagcccttggtaatcatgatgagtactttcagagaacgaatgatatagtgggtagaacatgac--------ttg |
481 |
Q |
| |
|
||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||| |||| || || | ||||||||||| ||| ||| |
|
|
| T |
29264909 |
aagacatgtgttccttcgcatcgatgaagcccttggtaatcatgatgagtactttcaaagaaggattggtgcagtgggtagaaagggactttcaccattg |
29264810 |
T |
|
| Q |
482 |
aagaagtgcatcgttgctcttcgtatactaatatacatatagatcaccaactaacagtgtggatgactatgtacgtatctgtg--aaagcacaacattgt |
579 |
Q |
| |
|
||||||||| | |||||||||||||||| ||||| |||||||| || ||||||| |||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
29264809 |
cagaagtgcactgctgctcttcgtatacta----gcatatggatcaccagctgacagtgtcgatgactatgtacgtatcggtgaaaaagcactacattgg |
29264714 |
T |
|
| Q |
580 |
cgtgctcagacaggtacgcaatgggcgcgggcacaatttttggtgatcagtacatgagaaggcaaaacaatgaagacattgcacgt |
665 |
Q |
| |
|
|||| |||||||| | |||||||| | |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29264713 |
aatgcttagacaggtttgtaatgggcgagtgcacgattgttggtgatcagtacatgagaaggccaaacaatgaagacattgcacgt |
29264628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 292 - 400
Target Start/End: Complemental strand, 26676117 - 26676010
Alignment:
| Q |
292 |
gaagtcgtgaagaagggtataagcgattgttcaaatgactacttctctgaaaatcctgtatacacggaggctcaattttgacaaaggttctgtatgtgaa |
391 |
Q |
| |
|
||||||||||||||||| |||| |||||||| || ||| || |||||||||||||| |||||||| | ||||||||| ||||||||||| | ||| || |
|
|
| T |
26676117 |
gaagtcgtgaagaagggaataatcgattgtttaa-tgagtatttctctgaaaatccagtatacacacaagctcaatttcgacaaaggttccgaatgcaaa |
26676019 |
T |
|
| Q |
392 |
gacatgtgt |
400 |
Q |
| |
|
||||||||| |
|
|
| T |
26676018 |
gacatgtgt |
26676010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 19731352 - 19731293
Alignment:
| Q |
324 |
aaatgactacttctctgaaaatcctgtatacacggaggctcaattttgacaaaggttctg |
383 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| || ||||||||| ||| ||||||||| |
|
|
| T |
19731352 |
aaatgactacttctatgaaaatccagtatacacagatgctcaatttggacgaaggttctg |
19731293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University