View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14351_low_24 (Length: 248)
Name: NF14351_low_24
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 35204294 - 35204079
Alignment:
| Q |
11 |
aagaatatatatgagtgtttgttgataaaacctgtcatgcacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgcc |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35204294 |
aagaaaatatatgagtgtttgttgataaaacctgtcatgcacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgcc |
35204195 |
T |
|
| Q |
111 |
actaaatgacaacatataagtttgagtcttgcagtttaattcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacacca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35204194 |
actaaatgacaacatataagtttgagtcttgcagcttaattcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacacca |
35204095 |
T |
|
| Q |
211 |
tttcaggatctatatg |
226 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35204094 |
tttcaggatctatatg |
35204079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 55859371 - 55859547
Alignment:
| Q |
50 |
cacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagtttaa |
149 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55859371 |
cacctagcactatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagcttaa |
55859470 |
T |
|
| Q |
150 |
ttcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacaccatttcaggatctatatg |
226 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55859471 |
ttcttattgtgtgtaacagttttgagccagactaccatagcccacatacagttccacaccatttcaggatctatatg |
55859547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 50 - 226
Target Start/End: Complemental strand, 29275227 - 29275051
Alignment:
| Q |
50 |
cacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagtttaa |
149 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29275227 |
cacctagcactatggtttctagtcacctgaattgaatatagatgatgaaatgttccttgccactaaatgacaacatataagtttgagtcttgcagcttaa |
29275128 |
T |
|
| Q |
150 |
ttcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacaccatttcaggatctatatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29275127 |
ttcctattgtgtgtaacagttttgagccagactaccatagcccacatacagttccacaccatttcaggatctatatg |
29275051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 46267346 - 46267515
Alignment:
| Q |
50 |
cacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagtttaa |
149 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46267346 |
cacctagcactatggtttctaggcacctgcattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagcttaa |
46267445 |
T |
|
| Q |
150 |
ttcctattgtgtgtaacagttttgagccagactatcatagcccacatacagttccacaccatttcaggatc |
220 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
46267446 |
ttcctattgtgtgtaacag-tttgagccagactatcatagtccacgtacagttccacaccatttcaggatc |
46267515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 50 - 226
Target Start/End: Complemental strand, 3822656 - 3822478
Alignment:
| Q |
50 |
cacctagcattatggtttctaggcacctgaattgaatatagatgatgaaatgttccctgccactaaatgacaacatataagtttgagtcttgcagtttaa |
149 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
3822656 |
cacctagcactatagtttctaggcacctgaattgaatatagatgataatatgttccctgccactaaatgacagcatataagtttgagtcatgcagcttaa |
3822557 |
T |
|
| Q |
150 |
tt-cctattgtgtgtaacagttttgagccagactatcatagcccacatacag-ttccacaccatttcaggatctatatg |
226 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3822556 |
ttccctattgtgtgtaatagttttgagccagactaccatagcccacatacagtttccacaccatttcaggatctatatg |
3822478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University