View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_low_29 (Length: 225)
Name: NF14351_low_29
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 18935114 - 18934927
Alignment:
| Q |
23 |
ttagatagaaacaaatagaattgttaagagcaattattaaaagatgactattagcctttcctcctaacaaatatgaacctctcttcatcatattgaagtt |
122 |
Q |
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| T |
18935114 |
ttagatagaaacaaatagaattgttaagagcaattattaaaagatgactattagcctttcctcctaacaaatattaacctctcttcatcatattgaagtt |
18935015 |
T |
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| Q |
123 |
ttagcaaaaataccaggtcagggagatgatttaac-ttgagtaaactaatgatagtaattttaggacttccaatagagatgaatggac |
209 |
Q |
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| T |
18935014 |
ttagcaaaaataccaggtcagggagatgatttaactttgagtaaactaatgatagtaattttaggacttccaatagagatgaatggac |
18934927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 34724969 - 34725076
Alignment:
| Q |
24 |
tagatagaaacaaatagaattgttaagagcaattattaaaagatgactattagcctttcctcctaacaaatatgaacctctcttcatcatattgaagttt |
123 |
Q |
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|||||||||| ||| |||||| | |||||||||||||||| | |||||||||||||||| ||| |||||| | |||||||||| ||||||||||||||| |
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| T |
34724969 |
tagatagaaataaagagaattaatgagagcaattattaaaaaacgactattagcctttcc-cctgacaaatgttaacctctctt-atcatattgaagttt |
34725066 |
T |
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| Q |
124 |
tagcaaaaat |
133 |
Q |
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|||| |||| |
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| T |
34725067 |
aagcataaat |
34725076 |
T |
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