View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14351_low_32 (Length: 221)

Name: NF14351_low_32
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14351_low_32
NF14351_low_32
[»] chr4 (3 HSPs)
chr4 (119-187)||(42976733-42976801)
chr4 (16-73)||(42976853-42976910)
chr4 (120-187)||(28679756-28679823)
[»] chr3 (7 HSPs)
chr3 (119-187)||(31658566-31658634)
chr3 (120-187)||(20104579-20104646)
chr3 (16-55)||(31658462-31658501)
chr3 (120-175)||(5233217-5233272)
chr3 (124-175)||(36949909-36949960)
chr3 (124-175)||(53282570-53282621)
chr3 (120-156)||(48912603-48912639)
[»] chr7 (1 HSPs)
chr7 (120-187)||(47328199-47328267)
[»] chr2 (3 HSPs)
chr2 (120-187)||(37079205-37079273)
chr2 (124-175)||(33754817-33754868)
chr2 (124-175)||(7089491-7089542)
[»] chr8 (1 HSPs)
chr8 (124-175)||(3879212-3879263)
[»] chr6 (1 HSPs)
chr6 (120-175)||(28137017-28137072)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 42976801 - 42976733
Alignment:
Q  119 ggaggaattgaaattggaagtgtttttatagaaatgtatttagctgtaatgttttttgttattatgtaa 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42976801 ggaggaattgaaattggaagtgtttttatagaaatgtatttagctgtaatgttttttgttattatgtaa 42976733  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 42976910 - 42976853
Alignment:
Q  16 tagcaataaatatttctataaacatttttcaacgtcacagctgctagtaattgttgag 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42976910 tagcaataaatatttctataaacatttttcaacgtcacagctgctagtaattgttgag 42976853  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 28679823 - 28679756
Alignment:
Q  120 gaggaattgaaattggaagtgtttttatagaaatgtatttagctgtaatgt-tttttgttattatgtaa 187  Q
    |||||||||||||||||||||||||||| | ||||||||||  |||||| | ||||| |||||||||||    
T  28679823 gaggaattgaaattggaagtgtttttat-ggaatgtatttaattgtaatatattttttttattatgtaa 28679756  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 31658566 - 31658634
Alignment:
Q  119 ggaggaattgaaattggaagtgtttttatagaaatgtatttagctgtaatgttttttgttattatgtaa 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31658566 ggaggaattgaaattggaagtgtttttatagaaatgtatttagctgtaatgttttttgttattatgtaa 31658634  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 20104646 - 20104579
Alignment:
Q  120 gaggaattgaaattggaagtgtttttatagaaatgtatttagctgtaatgttttttgttattatgtaa 187  Q
    |||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||| |||||||||||    
T  20104646 gaggaattgaaattggaattgtttttatggaaatgtatttaattgtaatgtttttttttattatgtaa 20104579  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 31658462 - 31658501
Alignment:
Q  16 tagcaataaatatttctataaacatttttcaacgtcacag 55  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31658462 tagcaataaatatttctataaacatttttcaacgtcacag 31658501  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 5233272 - 5233217
Alignment:
Q  120 gaggaattgaaattggaagtgtttttatagaaatgtatttagctgtaatgtttttt 175  Q
    |||||||||||||||||| |||||||||  |||||||||||  |||||||||||||    
T  5233272 gaggaattgaaattggaattgtttttatgaaaatgtatttaattgtaatgtttttt 5233217  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 36949909 - 36949960
Alignment:
Q  124 aattgaaattggaagtgtttttatagaaatgtatttagctgtaatgtttttt 175  Q
    |||||||||||||||||||||||| |||||||| |||  |||||||||||||    
T  36949909 aattgaaattggaagtgtttttatcgaaatgtaattaattgtaatgtttttt 36949960  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 53282621 - 53282570
Alignment:
Q  124 aattgaaattggaagtgtttttatagaaatgtatttagctgtaatgtttttt 175  Q
    |||||||||||||||||||||||| |||||||| |||  |||||||||||||    
T  53282621 aattgaaattggaagtgtttttatcgaaatgtaattaattgtaatgtttttt 53282570  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 48912603 - 48912639
Alignment:
Q  120 gaggaattgaaattggaagtgtttttatagaaatgta 156  Q
    ||||||||||||||||||||||||||||  |||||||    
T  48912603 gaggaattgaaattggaagtgtttttatgaaaatgta 48912639  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 47328267 - 47328199
Alignment:
Q  120 gaggaattgaaattggaagtgtttttatagaaatgtatttagctgtaatgtt-ttttgttattatgtaa 187  Q
    |||||||||||||||||| ||||||||| ||||||||||||  ||||||||| |||| |||||||||||    
T  47328267 gaggaattgaaattggaattgtttttatggaaatgtatttaattgtaatgttttttttttattatgtaa 47328199  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 37079273 - 37079205
Alignment:
Q  120 gaggaattgaaattggaagtgtttttatagaaatgtatttagctgtaatgtt-ttttgttattatgtaa 187  Q
    |||||||||||||||||| ||||||||| ||||||||||||  ||||||||| |||| |||||||||||    
T  37079273 gaggaattgaaattggaattgtttttatggaaatgtatttaattgtaatgttttttttttattatgtaa 37079205  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 33754817 - 33754868
Alignment:
Q  124 aattgaaattggaagtgtttttatagaaatgtatttagctgtaatgtttttt 175  Q
    |||||||||||||||||||||||| |||||||| |||  |||||||||||||    
T  33754817 aattgaaattggaagtgtttttatcgaaatgtaattaattgtaatgtttttt 33754868  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 7089542 - 7089491
Alignment:
Q  124 aattgaaattggaagtgtttttatagaaatgtatttagctgtaatgtttttt 175  Q
    |||||||||||||||||||||||| |||||||| |||  |||||| ||||||    
T  7089542 aattgaaattggaagtgtttttatcgaaatgtaattaattgtaatttttttt 7089491  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 3879212 - 3879263
Alignment:
Q  124 aattgaaattggaagtgtttttatagaaatgtatttagctgtaatgtttttt 175  Q
    |||||||||||||||||||||||| |||||||| |||  |||||||||||||    
T  3879212 aattgaaattggaagtgtttttatcgaaatgtaattaattgtaatgtttttt 3879263  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 28137017 - 28137072
Alignment:
Q  120 gaggaattgaaattggaagtgtttttatagaaatgtatttagctgtaatgtttttt 175  Q
    |||||||||||||| ||||||||||||| | |||||||||| || |||||||||||    
T  28137017 gaggaattgaaattagaagtgtttttatggcaatgtatttaactataatgtttttt 28137072  T

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