View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_low_33 (Length: 219)
Name: NF14351_low_33
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_33 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 35877404 - 35877217
Alignment:
| Q |
15 |
aatatcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatcaatcatattcaaacaaaaaccatctttaagaatc |
114 |
Q |
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| T |
35877404 |
aatatcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatcaatcatattcaaacaaaaaccatctttaagaatc |
35877305 |
T |
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| Q |
115 |
tcatcagcataaagtgtcctatcaccaagtcttgcttcaacatattttagataagcacaacgtcttatcaaccttcttaaaacatctt |
202 |
Q |
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| T |
35877304 |
tcatcagcataaagtgtcctatcaccaagtcttgcttcaacatattttagataagcacaacgtcttatcaaccttcttaaaacatctt |
35877217 |
T |
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Target: scaffold0005 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 192731 - 192562
Alignment:
| Q |
19 |
tcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatcaatcatattcaaacaaaaaccatctttaagaatctcat |
118 |
Q |
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| T |
192731 |
tcagcatcccatacagcttcctgtaagttcgtcacaaccttcaaagggcaaacaggtgtatcaaccatattcaaacaaaacccatctttcaaaatctcat |
192632 |
T |
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| Q |
119 |
cagcataaagtgtcctatcaccaagtcttgcttcaacatattttagataagcacaacgtcttatcaacct |
188 |
Q |
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| T |
192631 |
ctgcatgaagaaccctatcacctaatcttccctcgacatatttcaaatacgcacaccgcctaatcaacct |
192562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 14624652 - 14624821
Alignment:
| Q |
19 |
tcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatcaatcatattcaaacaaaaaccatctttaagaatctcat |
118 |
Q |
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||||||||||| |||||||| || || || || ||||| |||||||| |||||||| ||||||| ||||||||||||||| |||||||| | |||||||| |
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| T |
14624652 |
tcagcatcccatacagcttcctgtaagttcgtcacaaccttcaaagggcaaacaggtgtatcaaccatattcaaacaaaacccatctttcaaaatctcat |
14624751 |
T |
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| Q |
119 |
cagcataaagtgtcctatcaccaagtcttgcttcaacatattttagataagcacaacgtcttatcaacct |
188 |
Q |
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| T |
14624752 |
ctgcatgaagaaccctatcacctaatcttccctcgacatatttcaaatacgcacaccgcctaatcaacct |
14624821 |
T |
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