View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_low_4 (Length: 508)
Name: NF14351_low_4
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 3 - 495
Target Start/End: Complemental strand, 29251894 - 29251399
Alignment:
| Q |
3 |
ttatatttgtaatcttttgtttcatattgccnnnnnnnttgtttgtatgctttactttttaatgtagcttttctagtaatttgctcttaattaaaattaa |
102 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29251894 |
ttatatttgtaatcttttgtttcatattgccaaacaaattgtttgtatgctttactttttaatgtagcttttctagtaatttgctcttaattaaaattaa |
29251795 |
T |
|
| Q |
103 |
aaagcagcccggcaagcaaacgtctctagaagaaaactcgctgcttgcgggagacgggcatagtagaggcattgaaagaataacatgtgaatacatggta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | |
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| T |
29251794 |
aaagcagcccggcaagcaaacgtctctagaagaaaactcgctgcttgcgggagacgggcatagtagagacattgaaagaataaaatgtgaatacatggca |
29251695 |
T |
|
| Q |
203 |
caactatacatagttaactagatttagatacatatatttttaaataatcaatttttcaattgaaacctatttcatatttaagatgacagtaatgttcctt |
302 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29251694 |
caattatacatagttaactagatttagatacatatatttttaaataatcaatttttcaattgaaacctatttcatatttaagatgacagtaatgttcctt |
29251595 |
T |
|
| Q |
303 |
gttatatccaactcgatacccgactgtgccacatggtatttaggtgatttgtcaggattaaagagaccatagttttgctcagttgttgcaccattcttct |
402 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| |
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| T |
29251594 |
gttgtatccaactcgatacccgactgtgccacatggtatttaggtgatttgtcaggattaaagagaccatagtgttgttcagttgttgcaccagtcttct |
29251495 |
T |
|
| Q |
403 |
gattttcatcaaacatggcaaacaaataagtttcaat---agcaccgggcctcttaggagtaccgttcttgatgtgattgatcaaattagaataat |
495 |
Q |
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| T |
29251494 |
gattttcatcaaacatggcaaacaaataagtttcaatagcagcaccgggcctcttaggagtaccattcttgatgtgattgatcaaattagaataat |
29251399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 339 - 488
Target Start/End: Complemental strand, 29226105 - 29225956
Alignment:
| Q |
339 |
tatttaggtgatttgtcaggattaaagagaccatagttttgctcagttgttgcaccattcttctgattttcatcaaacatggcaaacaaataagtttcaa |
438 |
Q |
| |
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||||||||||||||||||||||||||||||||| | | ||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
29226105 |
tatttaggtgatttgtcaggattaaagagaccaaaatgttgttcagttgctgcaccagtcttctgattttcatcaaacatggcaaacaagtaagtctcaa |
29226006 |
T |
|
| Q |
439 |
tagcaccgggcctcttaggagtaccgttcttgatgtgattgatcaaatta |
488 |
Q |
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| || ||||| ||||||||||| || ||||||| |||||||||||||||| |
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| T |
29226005 |
ttgctccgggtctcttaggagtcccattcttgacgtgattgatcaaatta |
29225956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 339 - 487
Target Start/End: Complemental strand, 29241281 - 29241133
Alignment:
| Q |
339 |
tatttaggtgatttgtcaggattaaagagaccatagttttgctcagttgttgcaccattcttctgattttcatcaaacatggcaaacaaataagtttcaa |
438 |
Q |
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||||||| ||||||||||||||||||||||||| | | ||| ||||||| ||||||| ||||||||||||||||||||||||||||||| || || |||| |
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| T |
29241281 |
tatttagatgatttgtcaggattaaagagaccaaaatgttgttcagttgctgcaccagtcttctgattttcatcaaacatggcaaacaagtatgtctcaa |
29241182 |
T |
|
| Q |
439 |
tagcaccgggcctcttaggagtaccgttcttgatgtgattgatcaaatt |
487 |
Q |
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| || ||||| ||||||||||| || ||||||| ||||||||||||||| |
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| T |
29241181 |
ttgctccgggtctcttaggagtcccattcttgacgtgattgatcaaatt |
29241133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 339 - 488
Target Start/End: Complemental strand, 29230769 - 29230620
Alignment:
| Q |
339 |
tatttaggtgatttgtcaggattaaagagaccatagttttgctcagttgttgcaccattcttctgattttcatcaaacatggcaaacaaataagtttcaa |
438 |
Q |
| |
|
|||||||||| | ||| |||||||||||||||| | | ||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
29230769 |
tatttaggtgttctgttaggattaaagagaccaaaatgttgttcagttgctgcaccagtcttctgattttcatcaaacatggcaaacaagtaagtctcaa |
29230670 |
T |
|
| Q |
439 |
tagcaccgggcctcttaggagtaccgttcttgatgtgattgatcaaatta |
488 |
Q |
| |
|
|||| ||||| ||||||||||| || ||| ||| |||||||||||||||| |
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|
| T |
29230669 |
tagctccgggtctcttaggagtcccattcctgacgtgattgatcaaatta |
29230620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 355 - 442
Target Start/End: Original strand, 29253045 - 29253132
Alignment:
| Q |
355 |
caggattaaagagaccatagttttgctcagttgttgcaccattcttctgattttcatcaaacatggcaaacaaataagtttcaatagc |
442 |
Q |
| |
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||||||| ||||||||| | | ||| ||||||| ||||||| ||||||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
29253045 |
caggattgaagagaccaaaatgttgttcagttgctgcaccaggcttctgattttcatcaaacatagcaaacaagtaagtctcaatagc |
29253132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 282
Target Start/End: Complemental strand, 29241379 - 29241276
Alignment:
| Q |
181 |
aataacatgtgaatacatggtacaactatacatagttaactagatttagatacatat-atttttaaataatcaattt-ttcaattgaaacctatttcata |
278 |
Q |
| |
|
||||||||||| | |||||| |||| ||| |||||| ||||| |||||| | ||||| ||||||||| |||||||| |||||||||||| | ||| ||| |
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| T |
29241379 |
aataacatgtgcacacatggcacaattattcatagtaaactatatttagctgcatatcttttttaaattatcaatttattcaattgaaacttgtttgata |
29241280 |
T |
|
| Q |
279 |
ttta |
282 |
Q |
| |
|
|||| |
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|
| T |
29241279 |
ttta |
29241276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 436
Target Start/End: Original strand, 21286686 - 21286720
Alignment:
| Q |
402 |
tgattttcatcaaacatggcaaacaaataagtttc |
436 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |
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| T |
21286686 |
tgattttcatcaaacatggcaaataaataagtttc |
21286720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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