View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_low_6 (Length: 488)
Name: NF14351_low_6
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 41966482 - 41966065
Alignment:
| Q |
1 |
agagttggtgtatatttagtttcacttttggagacgacaaaattgatgtagaattgattttgatatatttaaatatgtttgcatataattgaatttacct |
100 |
Q |
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| T |
41966482 |
agagttggtgtatatttagtttcacttttagagacgacaaaattgatgtagaattaattttgatatatttaaatatgtttgcgtataattgaatttacct |
41966383 |
T |
|
| Q |
101 |
caagaaccgattataactcagaacacaaaatttaaagtttttgcttcttcaattgaattttaacatcaaatttattgttgcttcaattcacattgattca |
200 |
Q |
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| T |
41966382 |
caagaactgattatagctca-aacacaaaatttaaagtttttgcttcttcaattgaattttaacatcaaatttattgtttcttcaattcacattgattca |
41966284 |
T |
|
| Q |
201 |
agtcataactcgtttttagtagaaaccaatttttcaaaatcaactaattcaaagtcaannnnnnnncaccgcataatcaaacacatacttgaatgataaa |
300 |
Q |
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| T |
41966283 |
agtcataactcatttttagtaaaaaacaattttacaaaatcaactaattcaaattcaattttttttcaccgcataatcaaacacatact----tgataaa |
41966188 |
T |
|
| Q |
301 |
atgaattgaacttctatagagctgcttcggcaagaaaaacttaccaggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgcta |
400 |
Q |
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| T |
41966187 |
atgaattgaa--------------cttcggcaagaaaaacttaccaggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgcta |
41966102 |
T |
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| Q |
401 |
agatgtggtatggaatccttagtatcttgattataat |
437 |
Q |
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| T |
41966101 |
agatgtggtatggaatccttagtatcttgattataat |
41966065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 466
Target Start/End: Original strand, 37701257 - 37701290
Alignment:
| Q |
433 |
ataataattttaaaagatataagactactctgtc |
466 |
Q |
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| T |
37701257 |
ataataattttaaaagatataagactactctgtc |
37701290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 8e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 1227832 - 1227680
Alignment:
| Q |
41 |
aattgatgtagaattgattttgatatatttaaatatgtttgcatataattgaatttacctcaagaaccgattataactcagaacacaaaatttaaagttt |
140 |
Q |
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|||||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |
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| T |
1227832 |
aattgatgtaaaattgattttgatatatttaaatgtgttcgcgtataattgaatttacctcaaaaaccgattataactc-gaagacaaaatttaaagttt |
1227734 |
T |
|
| Q |
141 |
ttgcttcttcaattgaattttaacatcaaatttattgttgcttcaattcacatt |
194 |
Q |
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| T |
1227733 |
ttgcttctacaattgatttttagcatcaaatttattgttacttcaattcacatt |
1227680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 1227546 - 1227450
Alignment:
| Q |
338 |
aacttaccaggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtatggaatccttagtatcttgattata |
435 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||| |
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| T |
1227546 |
aacttaccaggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtgttgaa-ccttagtatctagattata |
1227450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 1227649 - 1227604
Alignment:
| Q |
213 |
tttttagtagaaaccaatttttcaaaatcaactaattcaaagtcaa |
258 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||| |||| |
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| T |
1227649 |
tttttaatagaaaccaattttacaaaatcaactaattcaaaatcaa |
1227604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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