View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_low_8 (Length: 457)
Name: NF14351_low_8
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 14 - 440
Target Start/End: Complemental strand, 46512096 - 46511667
Alignment:
| Q |
14 |
catcacaaattgagcatgagtatttaggtgcctgcactgttatattctatgtagcaagtttgaaagattaaaatatataccgcattactgtactttttca |
113 |
Q |
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| T |
46512096 |
catcacaaattgagcatgagtgtttaggtgcctgcactgttatattctatgtagcaagtttgaaagattaaaatatataccgcattactgtactttttca |
46511997 |
T |
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| Q |
114 |
agttcagtgaaggtgtaattatctttgagcatgtaatgaaaaaagtgatattgtatttggatctataagtcttaattttcaagtttaatgtgtttttgag |
213 |
Q |
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| T |
46511996 |
agttcagtgaaggtgtaattatctttgagcatgtaatgaaaaaagtgatattgtatttggatctataagtcttaattttcaagtttaatgtgtttttgag |
46511897 |
T |
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| Q |
214 |
attggcactgtaagacattgtatttgcaaactttcaataatgatggatctacgacatggctcatctgctagacaattgtgctagagttttatattgataa |
313 |
Q |
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| T |
46511896 |
attggcactgtatgacattgtatttgcaaactttcaataatgatggatctacgacatggctcatctgctagataattgtgctagagttttatattgataa |
46511797 |
T |
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| Q |
314 |
attttc---nnnnnnnnntgattaaggagagatcgccttattgaatttattatggattttgttgttaagactttgctcgcaagaaaaaggtagtagtata |
410 |
Q |
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| T |
46511796 |
attttcaaaaaaaaaaaatgattaaggagagatcgccttattgaatttattatggattttgttgttaagactttgctcgcaagaaaaaggtagtagtata |
46511697 |
T |
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| Q |
411 |
gtgttactgcttttgagttctgatcaagtt |
440 |
Q |
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| T |
46511696 |
gtgttactgtttttgagttctgatcaagtt |
46511667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 440
Target Start/End: Original strand, 15313907 - 15314015
Alignment:
| Q |
332 |
ttaaggagagatcgccttattgaatttattatggattttgttgttaagactttgctcgcaagaaaaaggtagtagtatagtgttactgcttttgagttct |
431 |
Q |
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| T |
15313907 |
ttaaggggagatcatcttattgaatttattatggatttggatgctatgatttggctctaaagtaaaaggtagtagtatagtgttactttcttcgagttca |
15314006 |
T |
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| Q |
432 |
gatcaagtt |
440 |
Q |
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| T |
15314007 |
gatcaagtt |
15314015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 15313750 - 15313805
Alignment:
| Q |
168 |
atttggatctataagtcttaattttcaagtttaatgtgtttttgagattggcactg |
223 |
Q |
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| T |
15313750 |
atttggatcaataagtcttaatttggaagtttgatgtgttttggagattagcactg |
15313805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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