View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14351_low_9 (Length: 436)
Name: NF14351_low_9
Description: NF14351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14351_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 26891366 - 26891536
Alignment:
| Q |
16 |
catcatcgttcctttgcggtgtttggttgtcgccgttcaattgccgtatttcacagttgtcgttcctttgccgtatttcgccctcaccgttcctttgctt |
115 |
Q |
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| T |
26891366 |
catcgtcgttcctttgcggtttttggttgtcgccgttcaatttccgtattttgcagttgtcgttctttttccgtatttcgccgtcaccattcctttgctt |
26891465 |
T |
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| Q |
116 |
cctacatcaattttatatggaaattgggtaattttctctatcgaattaaattaattttctttgtaaattaaa |
187 |
Q |
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| T |
26891466 |
cctacatcaattttatatggaaattgggtaattttctctatcgaattaaattaa-ttactttgtaaattaaa |
26891536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 26891597 - 26891633
Alignment:
| Q |
270 |
agaggaacattcccttcaattcatgtttgtgctgaaa |
306 |
Q |
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| T |
26891597 |
agaggaacattcccttcaattcatgtttgtgctgaaa |
26891633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 12072887 - 12073044
Alignment:
| Q |
21 |
tcgttcctttgcggtgtttggttgtcgccgttcaattgccgtatttcacagttgtcgttcctttgccgtatttcgccctcaccgttcctttgcttcctac |
120 |
Q |
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| T |
12072887 |
tcgttcctttgccgtgtttcgttgtcattgttcaattgccgt------ccgttgtcgttcctttgccgtatttcgcc------gttcctttgcttactac |
12072974 |
T |
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| Q |
121 |
atcaattttatatggaaattgggtaattttctctatcgaattaaattaattttctttgtaaattaaattga |
191 |
Q |
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| T |
12072975 |
attgattttatatggaaattgggtaaatttctctatggaattcaatcaattttcttt-taaattaaattga |
12073044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 337
Target Start/End: Original strand, 12073145 - 12073212
Alignment:
| Q |
270 |
agaggaacattcccttcaattcatgtttgtgctgaaaaacataatgaaattctatcaccaaagttaaa |
337 |
Q |
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| T |
12073145 |
agaggaacattcccttcaattcatgtttgagctgaaaaacattatgaaattctatcaccaaagttaaa |
12073212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 431
Target Start/End: Original strand, 43148739 - 43148809
Alignment:
| Q |
361 |
gaatctaacctttttatctaagttattttgtttattgtgtgaacctagcatatcttttatctggtgatctg |
431 |
Q |
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| T |
43148739 |
gaatctaacctttttatcttagtcattttgtttattgtgtgaacctggcatcccttttttctggtgatctg |
43148809 |
T |
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