View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14352_high_17 (Length: 333)
Name: NF14352_high_17
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 32551784 - 32551485
Alignment:
| Q |
18 |
ataacaaatctcaacaaatttcagagatgaatacacaatctctcaagtttctatagctttatcgcttttctgttatggtatatagagctttctagttcca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32551784 |
ataacaaatctcaacaaatttcagagatgaatacacaatctctcaagtttctatagctttatcgcttttctgttatggtatatagagctttctagttcca |
32551685 |
T |
|
| Q |
118 |
tttctacggcttccgagtctgattcttctcaaacaccatcaccggtgcctccacctgtgccaactccatcatcgctagttactttttgtacttcaaagaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32551684 |
tttctacggcttccgagtctgattcttctcaaacaccatcaccgttgcctccacctgtgccaactccatcatcgctagttactttttgtacttcaaagaa |
32551585 |
T |
|
| Q |
218 |
tgttttcaagacgtctgtacaacaaatcacgctgttcgctgtgttcatgcaaccgcaattgcatcacactgcaattgaggtctgatcttcaatcacgggt |
317 |
Q |
| |
|
|||||||||||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32551584 |
cgttttcaagacgtccgtgcaacaaattacgttgttcgctgtgttcatgcaaccgcaattgcatcacactgcaattgaggtctgatcttcaatcacgggt |
32551485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 40577320 - 40577364
Alignment:
| Q |
270 |
ccgcaattgcatcacactgcaattgaggtctgatcttcaatcacg |
314 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40577320 |
ccgcaattgcatcacactgcaattgcggtctgatcttcaatcacg |
40577364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University