View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14352_high_21 (Length: 291)
Name: NF14352_high_21
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 42033178 - 42033435
Alignment:
| Q |
19 |
tacacagatatctaattcatactacaaactctttcgaagtcacagaagcacacaactctttcaaagtacaaactatcatttacaattccaaataaacttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42033178 |
tacacagatatctaattcatactacaaactctttcgaagtcgcagaagcacacaactctttcaaagtacaaactatcatttacaattccaaataaacttg |
42033277 |
T |
|
| Q |
119 |
catctcaaacagtaaaatactccttgatagcttccagtatctgttttgctgcttctggaccaaacaaccttggaaagcttgaaccaagatcaacctcaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42033278 |
catctcaaacagtaaaatactccttgatagcttccagtatctgttttgctgcttctggaccaaacaaccttggaaagcttgaaccaagatcaacctcaat |
42033377 |
T |
|
| Q |
219 |
agtcttgtttctaataacaccatctctttttatcagataagctttatcttcctctcct |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42033378 |
agtcttgtttctaataacaccatctctttttatcagataagctttatcttcctctcct |
42033435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University