View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14352_high_26 (Length: 250)
Name: NF14352_high_26
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_high_26 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 37079002 - 37078760
Alignment:
| Q |
8 |
ccaagaatatgtttagtatccatgaaacaaacgcatcctaagtgtttttctttttctcaacatgaaacagaacacaatgtgcagtgcactctctaaaccc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37079002 |
ccaagaatatgtttagtatccatgaaacaaatgcatcctaagtgtttttctttttctcaacatgaaacagaacaaaatgtgcagtgcactctctaaaccc |
37078903 |
T |
|
| Q |
108 |
tcatcactatagctaaaaaccttgaatatgaaatacatgaaaggtaaagttgatcaataaaccaagtattgaatattgtgtttggcaagcaccatgttaa |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37078902 |
tcatcactatagctaacaaccttgaatatgaaatacatgaaaggtaaagttgatcaataaaccaagtattgaatattgtgtttggcaagcaccatgttaa |
37078803 |
T |
|
| Q |
208 |
atcatttattaacacttcctaaaatcatatttgaaggtattct |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37078802 |
atcatttattaacacttcctaaaatcatatttgaaggtattct |
37078760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 37064754 - 37064665
Alignment:
| Q |
135 |
atgaaatacatgaaaggtaaagttgatcaataaaccaagtattgaatattgtgtttggcaagcaccatgttaaatcatttattaacactt |
224 |
Q |
| |
|
||||||||||| |||||| || ||| | ||||| |||||||||| |||| ||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
37064754 |
atgaaatacataaaaggttgggtagataattaaacgaagtattgaaaattgagttaggcaagcaccatgttaaatcatttattaaaactt |
37064665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 219
Target Start/End: Complemental strand, 37068980 - 37068830
Alignment:
| Q |
59 |
ttttctcaacatgaaacagaacacaatgtgcagtgcactctctaaaccctcatcactatagctaaaaaccttgaatatgaaatacatgaaaggtaaagtt |
158 |
Q |
| |
|
||||||| ||||||||||| | |||||||||| ||||||| |||||||||||||||||| ||||| | |||||||||||||||| | ||| |
|
|
| T |
37068980 |
ttttctcgacatgaaacagtaaacaatgtgca-------ctctaaatcctcatcactatagctaacaacct--caaatgaaatacatgaaagttcgggtt |
37068890 |
T |
|
| Q |
159 |
gatcaataaaccaagtattgaatattgtgtttggcaagcaccatgttaaatcatttattaa |
219 |
Q |
| |
|
||||| | || |||||||||||||| ||||| | | | |||||||| ||||||||||||| |
|
|
| T |
37068889 |
gatcattgaattaagtattgaatattttgttt-gtaggtaccatgttcaatcatttattaa |
37068830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University