View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_high_27 (Length: 238)
Name: NF14352_high_27
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37078685 - 37078465
Alignment:
| Q |
1 |
caatgcaacaaaacataattggataataaacaggcaaaaataatcgaattcaggggtaatcgaacaggaatatacagcaacacaagcgagaactacgtaa |
100 |
Q |
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| T |
37078685 |
caatgcaacaaaacataattggataataaacaggcaaaaataatcgaattcaggggtaatcgaacaggaatatacagcaacacaagcgagaactacgtaa |
37078586 |
T |
|
| Q |
101 |
gttaaagacgacactgtcaacatatttgcagcttatagcataagcgctttttatttatgattagcattcatacataagctctttctttaaccaacaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37078585 |
gttaaagacgacactgtcaacatatttgcagcttatagcataagcgctttttatttatgattagcattcatacataagctctttctttaaccaacaacaa |
37078486 |
T |
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| Q |
201 |
taaaattttatcccactaagt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
37078485 |
taaaattttatcccactaagt |
37078465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 37068730 - 37068655
Alignment:
| Q |
10 |
aaaacataattggataataaacaggcaaaaataatcgaattcaggggtaatcgaacaggaatatacagcaacacaag |
86 |
Q |
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|||||||||||||||| ||||||| ||||| ||| ||||||| || ||||| |||| ||||||||||||||||||| |
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| T |
37068730 |
aaaacataattggatagtaaacagagaaaaacaattgaattcaagg-taatcaaacaagaatatacagcaacacaag |
37068655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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