View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_high_30 (Length: 226)
Name: NF14352_high_30
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 27403293 - 27403509
Alignment:
| Q |
7 |
ataatttcaaaatcacaatcgacattcttaaaggggacatacttggtggatggtgtgatgatagttaaagaggagtaatagagaatgtctaattttaaaa |
106 |
Q |
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| T |
27403293 |
ataatttcaaaatcacaatcgacattcttaaaggggacatacttggtggatggtgtgatgatagttaaagaggagtaatagagaatgtctaattttaaaa |
27403392 |
T |
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| Q |
107 |
gttgattttgaaaaggcttatgattcaatagattagagttttttaaaatatatgttaccaagagtaggttttgttgataaggggatagtgtgaatgaatg |
206 |
Q |
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| T |
27403393 |
attgattttgaaaagactta-gattcaatagattagagtttttttaaatatatgttaccaagagtaggttttgttgataaggggatagtgtgaatgaatg |
27403491 |
T |
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| Q |
207 |
cttgtgtctttggaggaa |
224 |
Q |
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| T |
27403492 |
cttgtgtctttggaggaa |
27403509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 75 - 193
Target Start/End: Complemental strand, 9875355 - 9875237
Alignment:
| Q |
75 |
agaggagtaatagagaatgtctaattttaaaagttgattttgaaaaggcttatgattcaatagattagagttttttaaaatatatgttaccaagagtagg |
174 |
Q |
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|||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| | |||| |||||||| | |||||||||| |||| | || |
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| T |
9875355 |
agaggagtaatagagaatgtctgatgttaaaatttgattttgaaaaggcttatgattcggtggattgaagttttttggagtatatgttacgaagattggg |
9875256 |
T |
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| Q |
175 |
ttttgttgataaggggata |
193 |
Q |
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| T |
9875255 |
ttatgttgataagtggata |
9875237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 9875440 - 9875376
Alignment:
| Q |
10 |
atttcaaaatcacaatcgacattcttaaaggggacatacttggtggatggtgtgatgatagttaa |
74 |
Q |
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| T |
9875440 |
atttcaaaatcacaatcggctttcttaaagaggagatatttggtgggtggtgtgatgatagttaa |
9875376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 39435782 - 39435742
Alignment:
| Q |
104 |
aaagttgattttgaaaaggcttatgattcaatagattagag |
144 |
Q |
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| T |
39435782 |
aaagttaattttgaaaaggcatatgattcaatagattagag |
39435742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 133
Target Start/End: Original strand, 16175439 - 16175468
Alignment:
| Q |
104 |
aaagttgattttgaaaaggcttatgattca |
133 |
Q |
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| T |
16175439 |
aaagttgattttgaaaaggcttatgattca |
16175468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 15015021 - 15014993
Alignment:
| Q |
104 |
aaagttgattttgaaaaggcttatgattc |
132 |
Q |
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| T |
15015021 |
aaagttgattttgaaaaggcttatgattc |
15014993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 17189383 - 17189355
Alignment:
| Q |
104 |
aaagttgattttgaaaaggcttatgattc |
132 |
Q |
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| T |
17189383 |
aaagttgattttgaaaaggcttatgattc |
17189355 |
T |
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