View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_high_6 (Length: 451)
Name: NF14352_high_6
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 50010240 - 50010668
Alignment:
| Q |
18 |
gaaatttcatgctttcattgagataagcttgagacttgaatggttatcttagaaagattttggcaccgagagtgtcttaaaatattccttaaaattttca |
117 |
Q |
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| T |
50010240 |
gaaatttcatgctttcattgagataagcttgagacttgaatggttatcttagaaagattttggcaccgagagtgtcttaaaatattccttaaaattttca |
50010339 |
T |
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| Q |
118 |
aaatagttaattattcattaaaaaatgtaagtatatatgtccttgatatgataaaaacacaacnnnnnnn-ccctnnnnnnnncaatacaacgtctttta |
216 |
Q |
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| T |
50010340 |
aaatagttaattattcattaaaaaatgtaagtatatatgtccttgatatgataaaaacacaacttttttttccctaaaaaaaacaatacaacgtctttta |
50010439 |
T |
|
| Q |
217 |
aggggggcgtaacacaattgatttatgcaacgcttaaaagaacactaacgttacataattatgttagtgttaattagtcaattagtaggagttagtcaat |
316 |
Q |
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| T |
50010440 |
aggggggcgtagcacaattgatttaagcaacgcttaaaagaatactaacgttacataattatgttagtgttaattagtcaattagtaggagttagtcaat |
50010539 |
T |
|
| Q |
317 |
tagttggtgcaatttcactctataaataggacaccacagttcataatcttttatcaattaatataattcattatgagcttctaactaataagtattctta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50010540 |
tagttggtgcaatttcactctataaataggacaccacagttcataatcttttatcaattaatataattcattatgagcttctaactaataagtattctta |
50010639 |
T |
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| Q |
417 |
tgctctttctcttttacgagaataatcta |
445 |
Q |
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| T |
50010640 |
tgctctttctcttttacgagaatgatcta |
50010668 |
T |
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