View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_high_7 (Length: 448)
Name: NF14352_high_7
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 48711589 - 48711230
Alignment:
| Q |
18 |
cttttcataaaaggaagtgcaaatggtggtattgatgctgcttttgatgaagttccctatgtcaggcactttcttggaatttatagttgttcttcttcaa |
117 |
Q |
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| T |
48711589 |
cttttcataaaaggaagtgcaaatggtggtattgatgctgcttttgatgaagttccctatgtcaagcactttcttggaatttatagttgttcttcttcaa |
48711490 |
T |
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| Q |
118 |
agtatgtcatggttgaaccaagatttaaaactggtggttttggctatgtaagttctgttaactctctctccctgatgtaatatcgtctttaattttccct |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48711489 |
agtatgccatggttgaaccaagatttaaaactggtggttttggctatgtaagttctgttaactctctctccctaatgtaatatcgtctttaattttccct |
48711390 |
T |
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| Q |
218 |
tgtgagcaacattgaaaaatccagacggaacaggctgattcaatgagttgaattgggaacttaattgaaccggtctgctcacaagttgttttgatcccaa |
317 |
Q |
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| T |
48711389 |
tgtgagcaacattgcaaaatccagacggaacaggctgattcaacgagttgaattgggaacttaattgaaccggtctgctcacaagttgttttgatcccaa |
48711290 |
T |
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| Q |
318 |
ttacattgcagtttagttgaattgaaccagtccaactatgattggttcaaccagtttgtg |
377 |
Q |
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| T |
48711289 |
ttacattgcagtttagttgaactgaaccagtccaactatgattggttcaaccagtttgtg |
48711230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 48700106 - 48699944
Alignment:
| Q |
18 |
cttttcataaaaggaagtgcaaatggtggtattgatgctgcttttgatgaagttccctatgtcaggcactttcttggaatttatagttgttcttcttcaa |
117 |
Q |
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||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| | | |||||||||||||| |||||||||||| || |
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| T |
48700106 |
ctttttataaaaggaagtgtaaatggtggcattgatgctgcttttgacgaagttccctatattaagcactttcttggaacttatagttgttc------aa |
48700013 |
T |
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| Q |
118 |
agtatgtcatggttgaaccaagatttaaaactggtggttttggctatgtaagttctgttaactctctct |
186 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |
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| T |
48700012 |
agtatgtcatggttgaaccaagatttaaaactggtggctttggctatgtaagttgtgtttactctctct |
48699944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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