View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_high_9 (Length: 412)
Name: NF14352_high_9
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 42 - 400
Target Start/End: Original strand, 3036210 - 3036568
Alignment:
| Q |
42 |
agaattatgatagaattgcattcctgtatagattatatatctcatgtatatataaatagttgtttcaaccttttcaatatattgagaattattcatattt |
141 |
Q |
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| T |
3036210 |
agaattatgatagaattgcattcctatatagattatatctctcatttatatataaatagttgtttcaaccttttcaatatattgagaattattcatattt |
3036309 |
T |
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| Q |
142 |
aagagtgcttatggataaatcataaaacttagatgcatacaataagctgcaactcactgtagcattataaatccatgaaatctgcggaacataagctgca |
241 |
Q |
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| T |
3036310 |
aagagtacttatggataaatcataaaacttagatgcatacaataagctgcaactcactgtagcattataaatccatgaaatctgcggaacataagctgca |
3036409 |
T |
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| Q |
242 |
gtgcctctgattgtagcatttccatcggatacaagaggtagctctccaagcattgctgaaataagtgatgttttcccttctccagtacctccaatgattg |
341 |
Q |
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| T |
3036410 |
gtccctctgattgtagcatttccatcagatacaagaggtagctctccaagcattgctgaaataagtgatgttttcccttctccagtacctccaatgattg |
3036509 |
T |
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| Q |
342 |
caactaagcttccaactggtatttcaacatttatatttgataatgtgggcttcatctct |
400 |
Q |
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| T |
3036510 |
caactaagcttccaactggtatttcaacatttatatttgataatgtgggcttcttctct |
3036568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 156 - 400
Target Start/End: Original strand, 3010713 - 3010957
Alignment:
| Q |
156 |
ataaatcataaaacttagatgcatacaataagctgcaactcactgtagcattataaatccatgaaatctgcggaacataagctgcagtgcctctgattgt |
255 |
Q |
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| T |
3010713 |
ataaatcataaatctgatatgaatacaataagttgcaaatcaccgtagcattgtaaatccatgaaatctgaggaacataagcgacagtgcctctgattat |
3010812 |
T |
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| Q |
256 |
agcatttccatcggatacaagaggtagctctccaagcattgctgaaataagtgatgttttcccttctccagtacctccaatgattgcaactaagcttcca |
355 |
Q |
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| T |
3010813 |
agcatttccatcagatacaagaggtagctctccaagcattgctgaaataagtgatgttttcccttctccagtacctccaatgattgcaactaagcttcca |
3010912 |
T |
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| Q |
356 |
actggtatttcaacatttatatttgataatgtgggcttcatctct |
400 |
Q |
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| T |
3010913 |
actggtatttcaacattgatatttgataatgtgggattcttctct |
3010957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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