View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_low_12 (Length: 397)
Name: NF14352_low_12
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_low_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 3947063 - 3946840
Alignment:
| Q |
8 |
aagtgatatccactggaagtcttccatcctgccatccgtgcaacgaatcaattagacaatggtcctgcaacaatatagtgagggcattacgtttatgttt |
107 |
Q |
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| T |
3947063 |
aagtgatatccactggaagtcttccatcctgccatccgtgcaacgaatcaattagacaatggtcctgcaacaatatagtgagggcattacgtttatgttt |
3946964 |
T |
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| Q |
108 |
tgacacacaattctctacactttgacttgaatttctcagtcattaacattattcatttttggtcagctcgaacttctttgtaccttgtgaataagcacgt |
207 |
Q |
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| T |
3946963 |
tgacacacaattctctacactttgacttgaatttctcagtcattaacattattcatttttggtcagctcgaacttctttgtaccttgtgaataagcacgt |
3946864 |
T |
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| Q |
208 |
ttatgagtagagaaccttttattt |
231 |
Q |
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|||||||||||||||||||||||| |
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| T |
3946863 |
ttatgagtagagaaccttttattt |
3946840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 223 - 397
Target Start/End: Original strand, 42665519 - 42665698
Alignment:
| Q |
223 |
cttttatttgtctaaaccaactaattctcaagaaaggggcacatgtatatctaaatttctgccataa-----ttaagtctaacaaagattgtttagacaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42665519 |
cttttatttgtctaaaccaactaattctcaagaaaggggcacaagtatatctaaatttctgccataaggtaattaagtctaacaaagattgtttagacaa |
42665618 |
T |
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| Q |
318 |
aattttaaattaaattctttcaaacgatttgttttaactgaagtttattagtcacttgagttcaattatttgagtgatga |
397 |
Q |
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| T |
42665619 |
aattttaaattaaattctttcaaacgatttgtcttaactgaagtttattagtcacttgagttcaattatttaagtgatga |
42665698 |
T |
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