View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_low_13 (Length: 384)
Name: NF14352_low_13
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 51273749 - 51274120
Alignment:
| Q |
1 |
atctcaaagcgtaaacttctcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273749 |
atctcaaagcgtaaacttctcatttcgttctcaccaaatctcaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatc |
51273848 |
T |
|
| Q |
101 |
ctaaacttgacaatataacaagnnnnnnncatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtag |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273849 |
ctaaacttgacaatataacaagaaaaaaacatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtag |
51273948 |
T |
|
| Q |
201 |
agtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactcgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51273949 |
agtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactagaa |
51274048 |
T |
|
| Q |
301 |
ggccttgtttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
372 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51274049 |
ggctttgtttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 14907797 - 14908094
Alignment:
| Q |
20 |
tcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataac |
119 |
Q |
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| T |
14907797 |
tcatttcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataac |
14907896 |
T |
|
| Q |
120 |
aagnnnnnnncatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaac |
219 |
Q |
| |
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||| |||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
14907897 |
aagaaaataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaac |
14907996 |
T |
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| Q |
220 |
atcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaacc |
317 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||| ||||| |||| ||| | ||||||||||||| |||||| ||||||| ||||| |
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| T |
14907997 |
atcctcacaaaagataggatcaaatttccactccctccaccgctacgaaccagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaacc |
14908094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 218 - 372
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
218 |
acatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaa-taaacgtgaccgtgtactcgaaggccttgtttgtgaac |
316 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||||||||||||||| | ||||| |||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
|
| Q |
317 |
ctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
372 |
Q |
| |
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|||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
5051299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 5051618 - 5051458
Alignment:
| Q |
1 |
atctcaaagcgtaaacttctcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatc |
100 |
Q |
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||||||||||||||||| ||| | | ||||||| | ||||| ||||||||||||||| ||| |||||||| | | ||||||| ||| |||||||||| | |
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| T |
5051618 |
atctcaaagcgtaaactcctcgtatggttctcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgacc |
5051519 |
T |
|
| Q |
101 |
ctaaacttgacaatataacaagnnnnnnncatgtcttatattcgagaattgtcggattttca |
162 |
Q |
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||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||| |
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| T |
5051518 |
ctaaactcgacaatataacaagataaaatcat-ccttatattcgagaattgttggattttca |
5051458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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