View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14352_low_14 (Length: 378)
Name: NF14352_low_14
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_low_14 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 6496923 - 6497276
Alignment:
| Q |
11 |
taatactcaattgatgactatatctttatgtgttacatacatgaagatgaaacatgctcatgtat-ttacatgaatatgactgaaattaatccaacaact |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6496923 |
taatactcaattgatgactatatctttatgtgttacatacatgaagatgaaacatgctcatgtatattacatgaatatgactgaaattaatccaacaact |
6497022 |
T |
|
| Q |
110 |
accgaggatacagctctgtatttgaagacccattgactgattcttgagctgaactatgaccccatgatttcatatcttgaaggtttctgctatccatatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497023 |
accgaggatacagctctgtatttgaagacccattgactgattcttgagctgaactatgaccccatgatttcatatcttgaaggtttctgctatccatatg |
6497122 |
T |
|
| Q |
210 |
aaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaaca |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497123 |
aaatgcaggttccaaaggcattgggagagtaactgaatcactatttagcatcactactacagtagccatgcttggcctgctagctacattctcttgaaca |
6497222 |
T |
|
| Q |
310 |
caaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgttt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497223 |
caaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgttt |
6497276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 6510100 - 6510262
Alignment:
| Q |
201 |
atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510100 |
atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
6510199 |
T |
|
| Q |
301 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgttt |
363 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
6510200 |
tcttgaacacaaagtaatccaatatgaatacatctaaaaatttcatttcgtgaatcattgttt |
6510262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 112 - 363
Target Start/End: Original strand, 6514384 - 6514626
Alignment:
| Q |
112 |
cgaggatacagctctgtatttgaagacccattgactgattcttgagctgaactatgaccccatgatttcatatcttgaaggtttctgctatccatatgaa |
211 |
Q |
| |
|
|||||| | |||| ||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||||||| | | ||||||| |
|
|
| T |
6514384 |
cgaggaaatagctgtgtatttgaagccccattgactgattcttgagcagaactatgacctgacgatttcatatcttgaggccct---------atatgaa |
6514474 |
T |
|
| Q |
212 |
atgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacaca |
311 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
6514475 |
atgcaggttgcaaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctcttgaacaca |
6514574 |
T |
|
| Q |
312 |
aagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgttt |
363 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||| |||| ||||||||| |
|
|
| T |
6514575 |
aagtaatccaatatggatacatctcattatctcatttagtgagtcattgttt |
6514626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 223 - 363
Target Start/End: Original strand, 6502468 - 6502608
Alignment:
| Q |
223 |
aaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaa |
322 |
Q |
| |
|
||||||||||| |||||||| || || ||||||||||||||||||| |||||||||| |||| || | ||| |||||||||||||||||||||||||| |
|
|
| T |
6502468 |
aaaggcattggaagagtaacagagtcgctattaagcatcactacaatagaagccatggttggtctatttactatattctcttgaacacaaagtaatccaa |
6502567 |
T |
|
| Q |
323 |
tatgtatacatctcaacatttcatttcgtgaatcattgttt |
363 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
6502568 |
tatggatacatcttagtatttcatttcgtgaatcattgttt |
6502608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 363
Target Start/End: Complemental strand, 6526001 - 6525882
Alignment:
| Q |
244 |
gaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacattt |
343 |
Q |
| |
|
|||| |||||||||||| | ||||| ||||||||| |||||||||||||| |||| ||||||||||||||||| ||||| || || ||||||| |||| |
|
|
| T |
6526001 |
gaatgactattaagcattagtacaatagaagccatagttggcctgctagctgcattttcttgaacacaaagtaacccaatgtggatgcatctcattattt |
6525902 |
T |
|
| Q |
344 |
catttcgtgaatcattgttt |
363 |
Q |
| |
|
| || ||||||||||||| |
|
|
| T |
6525901 |
cgttcactgaatcattgttt |
6525882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 47771647 - 47771543
Alignment:
| Q |
244 |
gaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacattt |
343 |
Q |
| |
|
|||| |||||||||||| | | |||||| ||||||| |||| ||| | ||||||| ||||||||||||||||| |||||||| || ||||||| |||| |
|
|
| T |
47771647 |
gaataactattaagcatgagtgcaacagtagccatggttggtctgtcaactacattttcttgaacacaaagtaagccaatatggatgcatctcattattt |
47771548 |
T |
|
| Q |
344 |
cattt |
348 |
Q |
| |
|
||||| |
|
|
| T |
47771547 |
cattt |
47771543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 47775799 - 47775695
Alignment:
| Q |
244 |
gaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacattt |
343 |
Q |
| |
|
|||| |||||||||||| | | |||||| ||||||| |||| ||| | ||||||| ||||||||||||||||| ||||||| |||||||||| |||| |
|
|
| T |
47775799 |
gaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatacatctcattattt |
47775700 |
T |
|
| Q |
344 |
cattt |
348 |
Q |
| |
|
||||| |
|
|
| T |
47775699 |
cattt |
47775695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 4124 - 4286
Alignment:
| Q |
201 |
atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4124 |
atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
4223 |
T |
|
| Q |
301 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgttt |
363 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
4224 |
tcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgttt |
4286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 11780 - 11942
Alignment:
| Q |
201 |
atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11780 |
atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
11879 |
T |
|
| Q |
301 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgttt |
363 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
11880 |
tcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgttt |
11942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 28843804 - 28843869
Alignment:
| Q |
289 |
ctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaa |
354 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||| || ||||||| |||||||||| |||| |
|
|
| T |
28843804 |
ctagctacattgtcttgcacacaaagtaacccaatatgaatgcatctcatgatttcatttcttgaa |
28843869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University