View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14352_low_17 (Length: 355)
Name: NF14352_low_17
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 329
Target Start/End: Original strand, 11859064 - 11859381
Alignment:
| Q |
12 |
gagatgaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaa |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11859064 |
gagaagaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaa |
11859163 |
T |
|
| Q |
112 |
caaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggccctcatcaccaatttgatgttga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
11859164 |
caaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggtcttcatcaccaatttgatgttga |
11859263 |
T |
|
| Q |
212 |
atccatagtaaaatgtgttactgatcagtctgatcatgagaaacgcatcttacttgttatagatgatttgcgaattgagattaagaatgatgatctcaag |
311 |
Q |
| |
|
||||||||||||| | |||||||||| || || |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| || |
|
|
| T |
11859264 |
atccatagtaaaaagcgttactgatcggtatgttcataagaaacgcgtcttacttgttatagatgatttgcgaattgagattgagaatggtgatctcgag |
11859363 |
T |
|
| Q |
312 |
aagttgcagaagaaatta |
329 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11859364 |
aagttgcagaagaaatta |
11859381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 25 - 330
Target Start/End: Original strand, 12037875 - 12038168
Alignment:
| Q |
25 |
ttatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaacaaaacttgctcg |
124 |
Q |
| |
|
|||||||||||||| |||| |||| || |||| ||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12037875 |
ttatagataaactggtgaacctgaagaacactgatgctgctgttcctgttgttattgttattgttggtgttcctggaattggcaaaacaaaacttgctca |
12037974 |
T |
|
| Q |
125 |
tctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggccctcatcaccaatttgatgttgaatccatagtaaaa |
224 |
Q |
| |
|
|||||||||||| |||||||||||| || || || ||| || ||| ||||||||||||| ||| |||||||||||||| |||| |||| |
|
|
| T |
12037975 |
tctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaaccaatttggatcaa----------aacc--tttgatgttgaatctatagcaaaa |
12038062 |
T |
|
| Q |
225 |
tgtgttactgatcagtctgatcatgagaaacgcatcttacttgttatagatgatttgcgaattgagatta---agaatgatgatctcaagaagttgcaga |
321 |
Q |
| |
|
||||| | | ||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||| || |||| |||| |||||||||||| |
|
|
| T |
12038063 |
agtgttgccg---agtctcatcatgagaaacgcctcttacttgttatagatgatttgagatttgagattaatgagcctgattatcttgagaagttgcaga |
12038159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 11826945 - 11827037
Alignment:
| Q |
61 |
ctgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
153 |
Q |
| |
|
||||||||||| || | |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| || ||||||||||||| |
|
|
| T |
11826945 |
ctgctgttcctgtttttattgctattgttggtgttactggaattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaag |
11827037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 11903379 - 11903281
Alignment:
| Q |
84 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatc |
182 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| |||||||||| || ||||||| || ||||||||||| |
|
|
| T |
11903379 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatc |
11903281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 11730826 - 11730895
Alignment:
| Q |
84 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
153 |
Q |
| |
|
|||||||||||||| ||||| || || ||||||||||| || || ||||| || |||||||||||||||| |
|
|
| T |
11730826 |
attgttggtgttccgggaatagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaag |
11730895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 11827171 - 11827250
Alignment:
| Q |
260 |
cttacttgttatagatgatttgcgaattgagat---taagaatgatgatctcaagaagttgcagaagaaattaatggagg |
336 |
Q |
| |
|
||||||| |||||||||||||| |||||| ||| |||| ||||||| ||| ||||||| ||||||||||| ||||||| |
|
|
| T |
11827171 |
cttacttattatagatgatttgagaattgcgattaataagcatgatgacctcgagaagttacagaagaaattgatggagg |
11827250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 11730382 - 11730451
Alignment:
| Q |
84 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
153 |
Q |
| |
|
|||||||||||| | ||||| || || ||||||||||| ||||| ||||| | |||||||||||||||| |
|
|
| T |
11730382 |
attgttggtgtttcaggaataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaag |
11730451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University