View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14352_low_18 (Length: 340)

Name: NF14352_low_18
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14352_low_18
NF14352_low_18
[»] chr5 (41 HSPs)
chr5 (16-148)||(10511513-10511645)
chr5 (247-330)||(12498569-12498652)
chr5 (247-330)||(26571133-26571216)
chr5 (247-330)||(34147479-34147562)
chr5 (248-330)||(21207229-21207311)
chr5 (247-330)||(12498897-12498980)
chr5 (247-330)||(19514932-19515015)
chr5 (247-330)||(25940523-25940606)
chr5 (247-330)||(26570731-26570814)
chr5 (247-330)||(43464161-43464243)
chr5 (247-328)||(10098521-10098602)
chr5 (247-330)||(34147143-34147224)
chr5 (247-330)||(3888241-3888324)
chr5 (247-330)||(22729409-22729491)
chr5 (247-330)||(37780322-37780404)
chr5 (248-330)||(43463759-43463840)
chr5 (247-330)||(19514527-19514611)
chr5 (247-330)||(25940983-25941066)
chr5 (247-326)||(37610204-37610282)
chr5 (248-330)||(2817152-2817234)
chr5 (248-330)||(10098910-10098991)
chr5 (247-326)||(22729010-22729088)
chr5 (259-330)||(41072183-41072254)
chr5 (248-330)||(3888631-3888713)
chr5 (248-330)||(30401885-30401967)
chr5 (242-330)||(2817544-2817631)
chr5 (242-326)||(37780715-37780799)
chr5 (248-330)||(11316717-11316799)
chr5 (248-330)||(11316943-11317025)
chr5 (242-330)||(37610587-37610674)
chr5 (247-323)||(18817587-18817663)
chr5 (248-321)||(11351405-11351478)
chr5 (247-323)||(11350810-11350885)
chr5 (247-323)||(18816954-18817030)
chr5 (247-330)||(42919307-42919389)
chr5 (248-322)||(31569910-31569983)
chr5 (247-299)||(5187830-5187882)
chr5 (247-299)||(18433316-18433368)
chr5 (247-299)||(25116061-25116113)
chr5 (247-299)||(25175151-25175203)
chr5 (247-299)||(33324838-33324890)
[»] chr2 (36 HSPs)
chr2 (247-330)||(7664250-7664333)
chr2 (247-330)||(8851551-8851634)
chr2 (242-330)||(7664642-7664730)
chr2 (247-330)||(5379928-5380011)
chr2 (248-330)||(8851151-8851233)
chr2 (248-330)||(26692399-26692481)
chr2 (248-330)||(41790494-41790575)
chr2 (247-330)||(5378663-5378746)
chr2 (247-326)||(37720206-37720285)
chr2 (248-330)||(26692789-26692871)
chr2 (247-328)||(18750097-18750177)
chr2 (245-330)||(19141444-19141528)
chr2 (242-330)||(17850975-17851062)
chr2 (248-330)||(19141818-19141898)
chr2 (247-330)||(41790881-41790964)
chr2 (245-330)||(6325316-6325401)
chr2 (247-330)||(16910829-16910912)
chr2 (252-330)||(6324924-6325002)
chr2 (251-330)||(7979573-7979650)
chr2 (247-330)||(16911238-16911320)
chr2 (247-330)||(17851371-17851454)
chr2 (248-330)||(5793450-5793532)
chr2 (247-330)||(7979972-7980054)
chr2 (234-323)||(26842214-26842303)
chr2 (247-323)||(2638822-2638898)
chr2 (247-323)||(2639458-2639534)
chr2 (247-323)||(26841589-26841665)
chr2 (247-323)||(38490817-38490892)
chr2 (248-330)||(18749729-18749810)
chr2 (242-299)||(30191225-30191282)
chr2 (247-323)||(18296078-18296154)
chr2 (248-323)||(7591204-7591279)
chr2 (277-323)||(7591826-7591872)
chr2 (248-301)||(18055314-18055367)
chr2 (247-299)||(20347464-20347516)
chr2 (247-299)||(30190925-30190977)
[»] chr1 (57 HSPs)
chr1 (247-330)||(26815088-26815171)
chr1 (241-330)||(21687021-21687110)
chr1 (246-330)||(50526441-50526525)
chr1 (247-330)||(46824247-46824330)
chr1 (242-330)||(9347123-9347211)
chr1 (242-330)||(13918443-13918531)
chr1 (242-330)||(26814691-26814779)
chr1 (247-330)||(4692402-4692485)
chr1 (247-330)||(6703462-6703545)
chr1 (247-330)||(20480170-20480252)
chr1 (247-328)||(20371042-20371121)
chr1 (248-330)||(28634126-28634208)
chr1 (248-330)||(48104681-48104763)
chr1 (248-330)||(50430050-50430132)
chr1 (242-330)||(27172113-27172200)
chr1 (242-330)||(48105085-48105173)
chr1 (242-330)||(50615590-50615677)
chr1 (242-330)||(50623418-50623505)
chr1 (247-330)||(9347520-9347602)
chr1 (247-330)||(19008719-19008802)
chr1 (247-326)||(32163016-32163095)
chr1 (248-330)||(999115-999196)
chr1 (248-330)||(44911406-44911488)
chr1 (248-330)||(46823846-46823928)
chr1 (247-324)||(6703869-6703946)
chr1 (242-330)||(49318135-49318222)
chr1 (242-330)||(49318412-49318499)
chr1 (247-330)||(28633722-28633805)
chr1 (247-330)||(44911027-44911110)
chr1 (247-330)||(49317754-49317836)
chr1 (248-330)||(42611583-42611665)
chr1 (249-330)||(50949534-50949615)
chr1 (247-330)||(999494-999576)
chr1 (247-330)||(13918836-13918919)
chr1 (248-330)||(42611188-42611270)
chr1 (242-330)||(20371321-20371409)
chr1 (242-330)||(47498298-47498384)
chr1 (242-320)||(20480591-20480668)
chr1 (250-315)||(32162734-32162799)
chr1 (247-326)||(27172514-27172593)
chr1 (247-330)||(39691969-39692052)
chr1 (279-330)||(50429690-50429741)
chr1 (248-330)||(44224088-44224169)
chr1 (242-323)||(6002234-6002315)
chr1 (248-321)||(50949164-50949237)
chr1 (235-299)||(17518602-17518665)
chr1 (247-323)||(49284411-49284487)
chr1 (248-299)||(1176839-1176890)
chr1 (247-330)||(4692024-4692106)
chr1 (247-294)||(50615242-50615289)
chr1 (247-294)||(50623070-50623117)
chr1 (259-321)||(21687445-21687507)
chr1 (247-301)||(47498493-47498546)
chr1 (246-323)||(6002870-6002947)
chr1 (247-299)||(47955608-47955660)
chr1 (247-301)||(8108991-8109045)
chr1 (247-299)||(47955308-47955360)
[»] chr7 (38 HSPs)
chr7 (247-330)||(20419293-20419376)
chr7 (247-330)||(22740158-22740241)
chr7 (248-330)||(18863970-18864052)
chr7 (242-330)||(37888830-37888918)
chr7 (247-330)||(3205062-3205145)
chr7 (247-330)||(9035262-9035345)
chr7 (247-330)||(10533036-10533119)
chr7 (247-330)||(13741559-13741642)
chr7 (247-330)||(13744202-13744284)
chr7 (247-330)||(17156969-17157052)
chr7 (247-330)||(37889228-37889311)
chr7 (247-330)||(37972365-37972448)
chr7 (248-330)||(20418891-20418973)
chr7 (249-330)||(48359627-48359707)
chr7 (247-330)||(29292924-29293007)
chr7 (247-330)||(48359322-48359404)
chr7 (248-330)||(22740560-22740641)
chr7 (242-330)||(29293315-29293403)
chr7 (247-330)||(37971962-37972045)
chr7 (238-330)||(3204662-3204752)
chr7 (247-330)||(38826882-38826965)
chr7 (247-330)||(9034869-9034953)
chr7 (259-330)||(18864371-18864442)
chr7 (248-330)||(42418997-42419079)
chr7 (248-326)||(36527387-36527464)
chr7 (247-330)||(36527767-36527850)
chr7 (247-330)||(42418593-42418676)
chr7 (247-322)||(46816288-46816363)
chr7 (247-306)||(16198970-16199029)
chr7 (242-323)||(44599486-44599567)
chr7 (247-323)||(44600111-44600187)
chr7 (247-323)||(8643742-8643818)
chr7 (247-323)||(13863315-13863391)
chr7 (247-323)||(13863933-13864008)
chr7 (243-293)||(5735553-5735603)
chr7 (247-299)||(3687656-3687708)
chr7 (247-299)||(8953889-8953940)
chr7 (247-299)||(9412325-9412377)
[»] chr4 (41 HSPs)
chr4 (247-326)||(293190-293269)
chr4 (247-330)||(4239335-4239418)
chr4 (247-330)||(39744434-39744517)
chr4 (247-330)||(43292039-43292122)
chr4 (242-330)||(169408-169496)
chr4 (242-330)||(32703619-32703707)
chr4 (247-330)||(9023649-9023732)
chr4 (247-330)||(25161880-25161963)
chr4 (247-330)||(28196742-28196825)
chr4 (247-330)||(39744032-39744115)
chr4 (247-330)||(9380309-9380392)
chr4 (247-330)||(9380710-9380793)
chr4 (247-330)||(26207715-26207798)
chr4 (247-330)||(28196348-28196431)
chr4 (247-330)||(48405964-48406046)
chr4 (247-329)||(292784-292866)
chr4 (247-330)||(169015-169099)
chr4 (247-330)||(23539843-23539924)
chr4 (247-330)||(9023246-9023329)
chr4 (247-330)||(23540221-23540304)
chr4 (247-330)||(26207363-26207445)
chr4 (247-330)||(32703227-32703310)
chr4 (247-330)||(43292326-43292409)
chr4 (260-330)||(44468892-44468962)
chr4 (247-330)||(39086592-39086675)
chr4 (260-330)||(25162282-25162352)
chr4 (242-330)||(39912456-39912543)
chr4 (263-330)||(48406354-48406421)
chr4 (267-330)||(12757788-12757851)
chr4 (247-326)||(39912056-39912134)
chr4 (247-323)||(50678781-50678857)
chr4 (247-330)||(36095819-36095902)
chr4 (248-323)||(36096451-36096526)
chr4 (247-323)||(50679400-50679476)
chr4 (247-323)||(56505695-56505771)
chr4 (248-323)||(43050610-43050685)
chr4 (248-330)||(12758173-12758254)
chr4 (247-301)||(24775781-24775835)
chr4 (247-299)||(13198906-13198958)
chr4 (247-323)||(43051228-43051304)
chr4 (247-323)||(45830172-45830248)
[»] chr3 (36 HSPs)
chr3 (247-330)||(47666304-47666387)
chr3 (248-330)||(53766166-53766248)
chr3 (242-330)||(42673265-42673352)
chr3 (247-330)||(48159899-48159982)
chr3 (247-330)||(53687890-53687973)
chr3 (242-330)||(10348768-10348856)
chr3 (242-330)||(48160302-48160390)
chr3 (243-330)||(22429565-22429651)
chr3 (237-330)||(44007959-44008052)
chr3 (242-330)||(53688272-53688359)
chr3 (247-330)||(26007184-26007266)
chr3 (247-330)||(40848523-40848605)
chr3 (247-330)||(40848930-40849013)
chr3 (247-330)||(42672980-42673062)
chr3 (242-320)||(3353125-3353202)
chr3 (248-330)||(27238869-27238951)
chr3 (242-330)||(24485429-24485516)
chr3 (259-330)||(3353520-3353591)
chr3 (247-330)||(27238467-27238550)
chr3 (247-330)||(47665913-47665996)
chr3 (248-330)||(26007588-26007670)
chr3 (242-330)||(42456164-42456250)
chr3 (258-330)||(24485034-24485106)
chr3 (247-330)||(36180558-36180639)
chr3 (247-330)||(10348481-10348564)
chr3 (247-330)||(36180959-36181042)
chr3 (242-330)||(44008370-44008457)
chr3 (247-330)||(22429160-22429243)
chr3 (247-323)||(21896487-21896562)
chr3 (247-330)||(8314015-8314098)
chr3 (247-306)||(42455792-42455851)
chr3 (247-306)||(53766572-53766631)
chr3 (239-299)||(20969019-20969079)
chr3 (242-299)||(10293909-10293966)
chr3 (278-330)||(1928403-1928455)
chr3 (247-299)||(10293610-10293662)
[»] chr8 (37 HSPs)
chr8 (248-330)||(34498125-34498207)
chr8 (247-330)||(37396710-37396793)
chr8 (248-330)||(15444616-15444698)
chr8 (248-330)||(25439095-25439176)
chr8 (237-330)||(16169576-16169669)
chr8 (242-330)||(9623499-9623587)
chr8 (242-330)||(24473340-24473428)
chr8 (242-330)||(37397114-37397202)
chr8 (247-330)||(17431289-17431372)
chr8 (247-330)||(20861607-20861690)
chr8 (247-330)||(41662523-41662606)
chr8 (238-306)||(25438785-25438853)
chr8 (247-330)||(6199065-6199148)
chr8 (247-330)||(24473737-24473820)
chr8 (247-330)||(34498524-34498607)
chr8 (242-323)||(9822745-9822826)
chr8 (247-323)||(13936725-13936800)
chr8 (242-330)||(16169171-16169258)
chr8 (247-330)||(6198660-6198743)
chr8 (243-294)||(33726692-33726743)
chr8 (247-330)||(2856528-2856611)
chr8 (247-330)||(15444213-15444296)
chr8 (242-323)||(22851387-22851468)
chr8 (242-323)||(39724024-39724105)
chr8 (247-323)||(9823337-9823413)
chr8 (247-323)||(13937365-13937441)
chr8 (248-323)||(13027257-13027332)
chr8 (279-330)||(33727074-33727125)
chr8 (242-323)||(3307335-3307416)
chr8 (245-330)||(15442763-15442848)
chr8 (243-299)||(765732-765788)
chr8 (247-323)||(13026637-13026713)
chr8 (247-299)||(15156185-15156237)
chr8 (242-299)||(37752416-37752473)
chr8 (247-299)||(15155885-15155937)
chr8 (247-299)||(41662403-41662455)
chr8 (247-299)||(43245873-43245925)
[»] scaffold0460 (2 HSPs)
scaffold0460 (247-330)||(332-415)
scaffold0460 (242-326)||(736-819)
[»] scaffold0069 (2 HSPs)
scaffold0069 (247-328)||(50077-50156)
scaffold0069 (242-330)||(50475-50563)
[»] scaffold0041 (2 HSPs)
scaffold0041 (247-330)||(38664-38747)
scaffold0041 (277-330)||(38283-38336)
[»] scaffold0017 (2 HSPs)
scaffold0017 (247-330)||(185243-185326)
scaffold0017 (247-330)||(184841-184924)
[»] chr6 (16 HSPs)
chr6 (247-330)||(7654517-7654600)
chr6 (247-330)||(10087827-10087910)
chr6 (247-330)||(33974268-33974351)
chr6 (248-330)||(32733965-32734047)
chr6 (242-330)||(2354406-2354493)
chr6 (247-330)||(2354779-2354862)
chr6 (247-330)||(22755058-22755141)
chr6 (263-330)||(29074341-29074408)
chr6 (263-330)||(29079105-29079172)
chr6 (263-330)||(29106914-29106981)
chr6 (242-330)||(22684327-22684414)
chr6 (242-330)||(22754654-22754741)
chr6 (259-326)||(13177029-13177096)
chr6 (242-323)||(33828987-33829068)
chr6 (247-323)||(33829612-33829688)
chr6 (247-299)||(18241856-18241908)
[»] scaffold0029 (1 HSPs)
scaffold0029 (247-330)||(9907-9991)
[»] scaffold0176 (2 HSPs)
scaffold0176 (259-330)||(19634-19705)
scaffold0176 (247-330)||(20012-20095)
[»] scaffold0802 (2 HSPs)
scaffold0802 (247-299)||(1120-1172)
scaffold0802 (247-299)||(1420-1472)
[»] scaffold0328 (1 HSPs)
scaffold0328 (247-323)||(6771-6847)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 10511513 - 10511645
Alignment:
Q  16 cttaggacactggttagcaagacctttaaacaaatttatatcttgtcttgtgtaaaatcaaaatcaattcaactcgatgatgaatgtgttggtttgagtc 115  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  10511513 cttaagacactggttagcaagacccttaaacaaatttatattttgtcttgtgtaaaatcagaatcaattcaactcgatgatgaatgtgttcgtttgagtc 10511612  T
Q  116 taatcaattcaaaataatctatacgattaaagg 148  Q
    |||||||||||||||||||||||| ||||||||    
T  10511613 taatcaattcaaaataatctatacaattaaagg 10511645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 12498569 - 12498652
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  12498569 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 12498652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 26571216 - 26571133
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  26571216 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 26571133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 34147562 - 34147479
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||| |||||||||||||||||||||||    
T  34147562 cttaattgcactttttccccctatagtttgtcaattgtgcgattttgcacctcgtagttttaaacgagcgattttgccccctat 34147479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 21207229 - 21207311
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  21207229 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 21207311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 12498980 - 12498897
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  12498980 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacaagcgattttgccccctat 12498897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 19515015 - 19514932
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||  ||||||||||||||    
T  19515015 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagttattttgccccctat 19514932  T

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Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 25940523 - 25940606
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| ||||| |||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  25940523 cttaattgcatttttttcccctatagtttgtcaattgtgcgattttgcaccctatagttttaaacgagcgattttgccccctat 25940606  T

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Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 26570731 - 26570814
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||| ||||||| ||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  26570731 cttaattacacttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgtcccctat 26570814  T

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Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 43464243 - 43464161
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  43464243 cttaattgcactttt-ccccctatagtttgtcaattgtgcgattttgcacctcatagttttaaacgagcgattttgccccctat 43464161  T

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Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 10098521 - 10098602
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccct 328  Q
    |||||||||||||||||| |||||||||| |||||||||| |||||||| || ||||||| |||||||||||||||||||||    
T  10098521 cttaattgcactttttcctcctatagtttgtcaattgtgcgattttgcatcctatagttttaaacgagcgattttgccccct 10098602  T

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Target: chr5; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 34147143 - 34147224
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||  ||| ||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||    
T  34147143 cttaattgcactttt--cccttatagtttatcaattgtgcgattttgcaccccgtagttttaaacgagcgattttgccccctat 34147224  T

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Target: chr5; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 3888241 - 3888324
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||| ||| |||||||||||||  ||||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  3888241 cttaattgcacatttcccccctatagtttgccaattgtacgattttgcaccccatagttttaaacgagcgattttgccccctat 3888324  T

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Target: chr5; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 22729491 - 22729409
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||| |||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  22729491 cttaattgcactttt-ccccctataatttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 22729409  T

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Target: chr5; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 37780322 - 37780404
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||  ||||||||||||||||||| |||||||||||||||||||||||    
T  37780322 cttaattgcactttt-ccccctatagtttgccaattgtgtgattttgcaccccatagttttaaacgagcgattttgccccctat 37780404  T

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Target: chr5; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 43463759 - 43463840
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| |||| ||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  43463759 ttaattgcactttt-ccccttatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 43463840  T

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Target: chr5; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 19514527 - 19514611
Alignment:
Q  247 cttaattgcactttttcccc-ctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||  |||| |||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  19514527 cttaattgcactttcccccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 19514611  T

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Target: chr5; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 25941066 - 25940983
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| || |||||||||| | |||| ||| |||||||| |||||||||| |||||||||||||||||||||||    
T  25941066 cttaattgcacttttccctcctatagtttgttaattatgcgattttgcatcccatagttttaaacgagcgattttgccccctat 25940983  T

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Target: chr5; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 37610204 - 37610282
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcccc 326  Q
    ||||||||||||||| |||||||||||||  ||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  37610204 cttaattgcactttt-ccccctatagtttgccaattgtgtgattttgcaccccatagttttaaacgagcgattttgcccc 37610282  T

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Target: chr5; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 2817152 - 2817234
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| | |||||||||||  ||||||||| |||||||| |||||| ||| |||||||||||||||||||||||    
T  2817152 ttaattgcacttttcctccctatagtttgccaattgtgcgattttgcatcccataattttaaacgagcgattttgccccctat 2817234  T

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Target: chr5; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 10098991 - 10098910
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| || |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||  |||||||    
T  10098991 ttaattgcactttt-cctcctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttatcccctat 10098910  T

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Target: chr5; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 22729010 - 22729088
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcccc 326  Q
    ||||||||||||||| ||||||||||||| | |||||||| |||||||||  |||||||| |||||||||||||||||||    
T  22729010 cttaattgcactttt-ccccctatagtttgtaaattgtgcgattttgcacttcatagttttaaacgagcgattttgcccc 22729088  T

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Target: chr5; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 41072254 - 41072183
Alignment:
Q  259 ttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||| |||||||||| |||||||| | ||||||||||| ||||||| |||||||||||||||||||||||    
T  41072254 ttttcctcctatagtttgtcaattgtacgattttgcaccctatagttttaaacgagcgattttgccccctat 41072183  T

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Target: chr5; HSP #24
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 3888713 - 3888631
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| || | |||| |||  ||||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  3888713 ttaattgcacttttccctcttataatttgccaattgtacgattttgcaccccatagttttaaacgagcgattttgccccctat 3888631  T

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Target: chr5; HSP #25
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 30401885 - 30401967
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| | | |||||||||  ||||||| |||||||||| |||||||||| |||| ||||||||||||||||||    
T  30401885 ttaattgcacttttcctctctatagtttgccaattgtacaattttgcatcccatagttttaaactagcgattttgccccctat 30401967  T

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Target: chr5; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 2817631 - 2817544
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||||| |||||||||||||   |||||||| ||||| || || ||||||| |||||||||||||||| ||||||    
T  2817631 tttgacttaattgcactttt-ccccctatagtttgcgaattgtgcgattttacatccaatagttttaaacgagcgattttgctccctat 2817544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 326
Target Start/End: Complemental strand, 37780799 - 37780715
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcccc 326  Q
    |||| |||||||| |||||| |||||||||||||   |||||||| |||||||||| ||| |||| |||||||||||||||||||    
T  37780799 tttggcttaattgtacttttcccccctatagtttgctaattgtgcgattttgcacctcattgttttaaacgagcgattttgcccc 37780715  T

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Target: chr5; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 11316717 - 11316799
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| || ||||||||||  ||||||| |||||||||| || ||| ||| |||||||| ||||||||||||||    
T  11316717 ttaattgcacttttccctcctatagtttgccaattgtacaattttgcatcctataattttaaacgagcaattttgccccctat 11316799  T

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Target: chr5; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 11317025 - 11316943
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| || || || |||  ||||||||| |||||||||||||| |||| ||| |||||||||||||||||||    
T  11317025 ttaattgcacttttttcctctgtactttgccaattgtgcgattttgcaccccattgttttaaatgagcgattttgccccctat 11316943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 37610674 - 37610587
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| |||||||| |||||  |||||||||||||   |||||||| |||||||||| ||| |||| |||||||||||||||||||||||    
T  37610674 tttggcttaattgtactttc-ccccctatagtttgctaattgtgcgattttgcacctcattgttttaaacgagcgattttgccccctat 37610587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 18817663 - 18817587
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  18817663 cttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 18817587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 11351478 - 11351405
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgatttt 321  Q
    ||||||||||||||  | |||||  |||  ||||||||| ||||||||||||||| ||| ||||||||||||||    
T  11351478 ttaattgcacttttcactcctatcttttgccaattgtgcgattttgcaccccatatttttaaacgagcgatttt 11351405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 11350810 - 11350885
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||| ||||  |||||||  |||  |||||||||| |||||||||||||| ||| ||||||||||||||||    
T  11350810 cttaattgcatttttcacccctatcttttgccaattgtgca-ttttgcaccccatatttttaaacgagcgattttgc 11350885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 18816954 - 18817030
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||| ||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  18816954 cttaattgcatttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 18817030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 42919307 - 42919389
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||| |||||||||| |||| |||  ||||||||| ||||| |||| |||  ||| |||||||||||||||| ||||||    
T  42919307 cttaattgctctttttcccc-tatatttttccaattgtgcgatttttcaccacatgtttttaaacgagcgattttgcaccctat 42919389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 322
Target Start/End: Original strand, 31569910 - 31569983
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttg 322  Q
    |||||||||||||| ||||||||  ||| |||||||||| |||||||||| |||  ||| ||||||| |||||||    
T  31569910 ttaattgcactttt-ccccctatcttttgtcaattgtgcgattttgcacctcatgtttttaaacgagtgattttg 31569983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 5187882 - 5187830
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| |||| |||  ||| | |||||||||||||||||||||    
T  5187882 cttaattgcacttttgccccttatcttttgttaattgtgcaattttgcacccc 5187830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 18433368 - 18433316
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  ||| | |||||||| ||||||||||||    
T  18433368 cttaattgcacttttcccccctatcttttgttaattgtgcgattttgcacccc 18433316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 25116113 - 25116061
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  ||| | |||||||| ||||||||||||    
T  25116113 cttaattgcacttttcccccctatcttttgttaattgtgcgattttgcacccc 25116061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 25175203 - 25175151
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  ||| | |||||||| ||||||||||||    
T  25175203 cttaattgcacttttcccccctatcttttgttaattgtgcgattttgcacccc 25175151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 33324890 - 33324838
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    |||||||||||||||| |||||||  ||| |||||||||  ||||||||||||    
T  33324890 cttaattgcacttttttcccctatcttttgtcaattgtgtgattttgcacccc 33324838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 7664250 - 7664333
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  7664250 cttaattgcacttttcccccctatagtttatcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 7664333  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 8851634 - 8851551
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  8851634 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 8851551  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 7664730 - 7664642
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  7664730 tttggcttaattgcacttttcctccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 7664642  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 5380011 - 5379928
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||| |||||||||||| |||||||||||||||||    
T  5380011 cttaattgcacttttcccccctatagtttaccaattgtgcgattttgcaccccgtagtttaaaacgtgcgattttgccccctat 5379928  T

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Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 8851151 - 8851233
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  8851151 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 8851233  T

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Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 26692399 - 26692481
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  26692399 ttaattgcactttttccctctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgctccctat 26692481  T

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Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 41790494 - 41790575
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  41790494 ttaattgca-tttttccccctatagtttgtcaattgtgcgattttgcaccccattgtttaaaacgagcgattttgccccctat 41790575  T

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Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 5378663 - 5378746
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| |||||||||||| |||||||||||| |||||||||||||||||    
T  5378663 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccgtagtttaaaacgtgcgattttgccccctat 5378746  T

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Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 37720206 - 37720285
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcccc 326  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  37720206 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgcccc 37720285  T

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Target: chr2; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 26692871 - 26692789
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| ||| |||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  26692871 ttaattgcacttttcccctctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 26692789  T

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Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 247 - 328
Target Start/End: Complemental strand, 18750177 - 18750097
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccct 328  Q
    ||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  18750177 cttaattgcacttct-ccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccct 18750097  T

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Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 19141444 - 19141528
Alignment:
Q  245 gacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||| ||| ||||||||    
T  19141444 gacttaattgcactttttccccctatagtttgccaattgtgc-attttgcaccccatagttttaaacgagcgaatttaccccctat 19141528  T

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Target: chr2; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 17850975 - 17851062
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  17850975 tttggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttt-taacgagcgattttgccccctat 17851062  T

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Target: chr2; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 19141898 - 19141818
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||  |||||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  19141898 ttaattgcacttt--ccccctatagtttgccaattgtgcgattttgcatcccatagtttaaaacgagcgattttgccccctat 19141818  T

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Target: chr2; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 41790964 - 41790881
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||| |||  ||||||||| ||||||| |||||| ||||||||||||||||||||||||||||    
T  41790964 cttaattgcacttttcccccctatattttgccaattgtgcgattttgccccccattgtttaaaacgagcgattttgccccctat 41790881  T

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Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 6325401 - 6325316
Alignment:
Q  245 gacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||||| |||| ||||||||  ||||||||| |||||||||| |||||| | |||||||||||||||||||||||    
T  6325401 gacttaattgcacttttcccccatatagtttgccaattgtgcgattttgcacctcatagtattaaacgagcgattttgccccctat 6325316  T

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Target: chr2; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 16910829 - 16910912
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||| | ||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  16910829 cttaattgcacttttcccccatgtagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccctctat 16910912  T

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Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 252 - 330
Target Start/End: Original strand, 6324924 - 6325002
Alignment:
Q  252 ttgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| |||||||||||||  ||||||||| |||||||| |||||||||| ||||||||||||||| |||||||    
T  6324924 ttgcacttttcccccctatagtttgccaattgtgcgattttgcatcccatagttttaaacgagcgattttgtcccctat 6325002  T

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Target: chr2; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 7979573 - 7979650
Alignment:
Q  251 attgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||  ||| ||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  7979573 attgcactttt--cccttatagtttgacaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 7979650  T

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Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 16911320 - 16911238
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||  |||| ||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  16911320 cttaattgcactttcgcccc-tatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgtcccctat 16911238  T

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Target: chr2; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 17851454 - 17851371
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||| |   ||||||||  ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  17851454 cttaattgcacttttttcttttatagtttgccaattgtgcgattttacaccccatagttttaaacgagcgattttgccccctat 17851371  T

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Target: chr2; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 5793450 - 5793532
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| |||| | ||||||  ||||||||| |||||||| || ||||||| |||||||||||||||||||||||    
T  5793450 ttaattgcacttttcccccttgtagtttgccaattgtgcgattttgcatcctatagttttaaacgagcgattttgccccctat 5793532  T

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Target: chr2; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 7980054 - 7979972
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||| | ||||||||   |||||||| ||||||||||||||||||| ||||||||||||| ||| |||||    
T  7980054 cttaattgcactttttcctc-tatagtttgctaattgtgcgattttgcaccccatagttttaaacgagcgatttcgccgcctat 7979972  T

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Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 26842303 - 26842214
Alignment:
Q  234 cataaaagtttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||| ||||| ||||| |||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  26842303 cataaacgtttggcttaagtgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 26842214  T

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Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 2638822 - 2638898
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||| ||||  |||||||  |||  ||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  2638822 cttaattgcatttttcacccctatcttttgccaattgtgcgattttgcaccccatatttttaaacgagcgattttgc 2638898  T

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Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 2639534 - 2639458
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  2639534 cttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 2639458  T

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Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 26841589 - 26841665
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  26841589 cttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 26841665  T

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Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 38490892 - 38490817
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    ||||||||||||||  | |||||||||||| ||||||||| |||||||| | ||| |||| ||||||||||||||||    
T  38490892 cttaattgcactttc-ctccctatagtttaccaattgtgcgattttgcatctcatggttttaaacgagcgattttgc 38490817  T

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Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 18749729 - 18749810
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| | || | |||||| |||||| ||  ||||||||||||||||||| ||||||  |||||||||||||||    
T  18749729 ttaattgcacttttactcc-tctagtttgtcaattatgtgattttgcaccccatagttttaaacgaatgattttgccccctat 18749810  T

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Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 30191282 - 30191225
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    |||| ||||||||||||||| ||||||||  ||||| |||||||| ||||||||||||    
T  30191282 tttggcttaattgcacttttcccccctatcttttattaattgtgcgattttgcacccc 30191225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 18296078 - 18296154
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||| ||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  18296078 cttaattgtacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 18296154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 7591204 - 7591279
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    ||||||| ||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  7591204 ttaattgtacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 7591279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 323
Target Start/End: Complemental strand, 7591872 - 7591826
Alignment:
Q  277 tcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  7591872 tcaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 7591826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 18055367 - 18055314
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccat 301  Q
    |||||||||||||||||| |||   ||| |||||||||| ||||||||||||||    
T  18055367 ttaattgcactttttccctctaccttttgtcaattgtgcgattttgcaccccat 18055314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 20347516 - 20347464
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  |||  ||||||||| ||||||||||||    
T  20347516 cttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 20347464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 30190925 - 30190977
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  |||  ||||||||| ||||||||||||    
T  30190925 cttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 30190977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 57)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 26815171 - 26815088
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  26815171 cttaattgcacttttcccccctatagtttatcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 26815088  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 21687021 - 21687110
Alignment:
Q  241 gtttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  21687021 gtttggcttaattgcacttttcccccctatagtttgtcaattgtgtaattttgcaccccatagttttaaacgagcgattttgccccctat 21687110  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 50526525 - 50526441
Alignment:
Q  246 acttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  50526525 acttaattgcactttttccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 50526441  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 46824330 - 46824247
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46824330 cttaattgcactttttcctcctatagtttgccaattgtgcaattttgcaccccatagttttaaacgagcgattttgccccctat 46824247  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 9347123 - 9347211
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  9347123 tttggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 9347211  T

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Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 13918443 - 13918531
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| |||||||||||||||||| ||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  13918443 tttggcttaattgcactttttcctcctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 13918531  T

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Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 26814691 - 26814779
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  26814691 tttggcttaattgcacttttcctccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 26814779  T

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Target: chr1; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 4692485 - 4692402
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| || |||||    
T  4692485 cttaattgcactttttccccctatagtttgccaattgtgcaattttgcaccccatagttttaaacgagcgattttacctcctat 4692402  T

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Target: chr1; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 6703462 - 6703545
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  6703462 cttaattgcactttttcctcctatagtttaccaattgtgcgattttgcacctcatagttttaaacgagcgattttgccccctat 6703545  T

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Target: chr1; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 20480170 - 20480252
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  20480170 cttaattgcactttt-ccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 20480252  T

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Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 20371042 - 20371121
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccct 328  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20371042 cttaattgcacttt--ccccctatagtttgtcaattgtgcaattttgcaccccatagttttaaacgagcgattttgccccct 20371121  T

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Target: chr1; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 28634208 - 28634126
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||    
T  28634208 ttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgatcgattttgccccctat 28634126  T

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Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 48104681 - 48104763
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  48104681 ttaattgcacttttcccccctatagtttggcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 48104763  T

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Target: chr1; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 50430132 - 50430050
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  50430132 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 50430050  T

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Target: chr1; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 27172113 - 27172200
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  27172113 tttggcttaattgcactttt-ccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 27172200  T

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Target: chr1; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 48105173 - 48105085
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |||| ||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  48105173 tttggcttaattgcacttttcccccttatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 48105085  T

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Target: chr1; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 50615677 - 50615590
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  50615677 tttggcttaattgcactttt-ccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaatgagcgattttgccccctat 50615590  T

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Target: chr1; HSP #18
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 50623505 - 50623418
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  50623505 tttggcttaattgcactttt-ccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaatgagcgattttgccccctat 50623418  T

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Target: chr1; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 9347602 - 9347520
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9347602 cttaattgcactttc-ccccctatagtttgccaattgtgcaattttgcaccccatagttttaaacgagcgattttgccccctat 9347520  T

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Target: chr1; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 19008802 - 19008719
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||||||||| || ||||||||||||||    
T  19008802 cttaattgcacttttcccccctatagtttcgcaattgtgcgattttgcaccccatagtttaaaacgtgcaattttgccccctat 19008719  T

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Target: chr1; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 32163095 - 32163016
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcccc 326  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  32163095 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgcccc 32163016  T

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Target: chr1; HSP #22
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 999115 - 999196
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  999115 ttaattgcactttt-ccccctatagtttgtcaattgtgcgattttgcatcccatagttttaaacgagcgattttgccccctat 999196  T

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Target: chr1; HSP #23
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 44911488 - 44911406
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  44911488 ttaattgcattttttccccctatagtttgccaattgtgcgattttgcaccctattgtttaaaacgagcgattttgccccctat 44911406  T

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Target: chr1; HSP #24
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 46823846 - 46823928
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| |||||||||||||  ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  46823846 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcactccatagttttaaacgagcgattttgccccctat 46823928  T

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Target: chr1; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 6703946 - 6703869
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcc 324  Q
    |||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||    
T  6703946 cttaattgcacttttctcccctatagtttgccaattgtgcaattttgcaccccatagttttaaacgagcgattttgcc 6703869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 49318222 - 49318135
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||  |||||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  49318222 tttggcttaattgcactttc-ccccctatagtttgccaattgtgcgattttgcatcccatagtttaaaacgagcgattttgccccctat 49318135  T

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Target: chr1; HSP #27
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 49318499 - 49318412
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||  |||||||    
T  49318499 tttggcttaattgca-tttttccccctatagtttatcaattgtgcgattttgcatcccatagttttaaacgagcgattttatcccctat 49318412  T

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Target: chr1; HSP #28
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 28633722 - 28633805
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||| ||||||||  ||||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  28633722 cttaattgcacttttcccccttatagtttgccaattgtacgattttgcaccccatagttttaaacgagcgattttgccccctat 28633805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 44911027 - 44911110
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||  ||||||||| |||  ||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  44911027 cttaattgcactttccccccctatattttgccaattgtgcgattttgcaccccattgtttaaaacgagcgattttgccccctat 44911110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 49317754 - 49317836
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  49317754 cttaattgcactttt-ccccctatagtttgccaattgtgcaattttgcatcccatagttttaaacgagcgattttaccccctat 49317836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 42611665 - 42611583
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||  |||||||||||| |||||||||| |||||||||| |||||||| |||| ||||||||||||||||||    
T  42611665 ttaattgcacttttctcccctatagtttgtcaattgtgcgattttgcacctcatagttttaaacaagcgattttgccccctat 42611583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 50949615 - 50949534
Alignment:
Q  249 taattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||  ||||||||||||| |||||||||| |||||||| | ||| ||||||||||||||||||||||||||||    
T  50949615 taattgcactttccccccctatagtttgtcaattgtgcgattttgcatctcattgtttaaaacgagcgattttgccccctat 50949534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 999576 - 999494
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  999576 cttaattgcactttt-ccccctatagattgccaattgtgcgattttgcaacccatagttttaaacgagcgattttgccccctat 999494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 13918919 - 13918836
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| | |||||||||||  ||||||||| |||||||||| |||||||| |||||| ||||||||||||||||    
T  13918919 cttaattgcacttttcctccctatagtttgccaattgtgcgattttgcacctcatagttttaaacgaacgattttgccccctat 13918836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 42611188 - 42611270
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| |||| ||||||||  ||||||||| |||||||||| |||||||| ||||||||||||||||| |||||    
T  42611188 ttaattgcacttttcccccttatagtttgccaattgtgcgattttgcacctcatagttttaaacgagcgattttgcctcctat 42611270  T

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Target: chr1; HSP #36
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 20371409 - 20371321
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgca-ccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |||||||||||||  ||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||    
T  20371409 tttggcttaattgcactttt-ccccctatagtttgccaattgtgcgattttgcacccccatagttttaaacgagcaattttgccccctat 20371321  T

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Target: chr1; HSP #37
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 47498298 - 47498384
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||  |||||||||||||  |||||||||||||||||| |||||||||| |||| ||||||||||||| ||||    
T  47498298 tttggcttaattgcacttt--ccccctatagtttgccaattgtgcaattttgcatcccatagttttaaacaagcgattttgccctctat 47498384  T

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Target: chr1; HSP #38
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 20480668 - 20480591
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattt 320  Q
    |||| ||||||||||||||| |||||||||||||  ||||||||| ||||||||||| ||||||| |||||||||||||    
T  20480668 tttggcttaattgcactttt-ccccctatagtttgccaattgtgcgattttgcaccctatagttttaaacgagcgattt 20480591  T

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Target: chr1; HSP #39
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 32162734 - 32162799
Alignment:
Q  250 aattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagc 315  Q
    ||||||||||||||  ||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  32162734 aattgcactttttcttcctatagtttgccaattgtgcaattttgcaccccatagttttaaacgagc 32162799  T

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Target: chr1; HSP #40
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 27172593 - 27172514
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcccc 326  Q
    ||||||||||||||| |||||| || |||  ||||||||| |||||||| ||||| |||| |||||||||||||||||||    
T  27172593 cttaattgcacttttcccccctgtactttgccaattgtgcgattttgcatcccattgttttaaacgagcgattttgcccc 27172514  T

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Target: chr1; HSP #41
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 39692052 - 39691969
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||| ||| |||||||||| ||||||||||||||  ||| ||||| | |||||||| ||||||    
T  39692052 cttaattgcacttttcccccctatattttgtcaattgtgcgattttgcaccccatgtttttaaacgtgtgattttgcaccctat 39691969  T

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Target: chr1; HSP #42
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 50429690 - 50429741
Alignment:
Q  279 aattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  50429690 aattgtgcgattttgcacctcatagttttaaacgagcgattttgccccctat 50429741  T

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Target: chr1; HSP #43
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 44224169 - 44224088
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||  |||| | ||||||| ||||||||  |||||||| |||||||||| ||||||||||||||| |||||||    
T  44224169 ttaattgcactttg-ccccatgtagtttaccaattgtgtgattttgcatcccatagttttaaacgagcgattttgtcccctat 44224088  T

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Target: chr1; HSP #44
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 323
Target Start/End: Original strand, 6002234 - 6002315
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||| |||||||||||||||  |||||||  ||| |||||||||  ||||||||||||||  ||| ||||||||||||||||    
T  6002234 tttggcttaattgcacttttcacccctatcttttgtcaattgtgtgattttgcaccccatgtttttaaacgagcgattttgc 6002315  T

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Target: chr1; HSP #45
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 50949164 - 50949237
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgatttt 321  Q
    ||||||| |||||| || |||||||| |  ||||||||| |||||||||| ||| |||||||||||||||||||    
T  50949164 ttaattgtacttttccctcctatagtctgccaattgtgcgattttgcacctcattgtttaaaacgagcgatttt 50949237  T

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Target: chr1; HSP #46
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 17518665 - 17518602
Alignment:
Q  235 ataaaagtttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||||||||||| ||||||||||||  |||  ||||||||| ||||||||||||    
T  17518665 ataaaagtttgacttaattgcac-ttttccccctatcttttgccaattgtgcgattttgcacccc 17518602  T

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Target: chr1; HSP #47
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 49284411 - 49284487
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  49284411 cttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 49284487  T

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Target: chr1; HSP #48
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 1176839 - 1176890
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    |||||||||||||| ||||||||  ||| |||||||||||||||||||||||    
T  1176839 ttaattgcacttttaccccctatcttttgtcaattgtgcaattttgcacccc 1176890  T

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Target: chr1; HSP #49
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 4692024 - 4692106
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| ||| | ||||||||   |||||| | |||||||| || |||||||||||||||| ||||||||||||||    
T  4692024 cttaattgcactttctcctc-tatagtttgctaattgtacgattttgcatcctatagtttaaaacgagccattttgccccctat 4692106  T

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Target: chr1; HSP #50
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 50615242 - 50615289
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgc 294  Q
    ||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  50615242 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgc 50615289  T

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Target: chr1; HSP #51
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 50623070 - 50623117
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgc 294  Q
    ||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  50623070 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgc 50623117  T

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Target: chr1; HSP #52
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 21687507 - 21687445
Alignment:
Q  259 ttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgatttt 321  Q
    ||||||||||||| |||  ||||||||| |||||| ||| |||||||| ||||||||||||||    
T  21687507 ttttccccctataatttgccaattgtgcgattttgtacctcatagttttaaacgagcgatttt 21687445  T

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Target: chr1; HSP #53
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 47498546 - 47498493
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccat 301  Q
    ||||||||||||||| ||||||||||||| ||||||||||  |||||||||||||    
T  47498546 cttaattgcactttt-ccccctatagtttgtcaattgtgcggttttgcaccccat 47498493  T

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Target: chr1; HSP #54
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 6002947 - 6002870
Alignment:
Q  246 acttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    ||||||||||||||||   ||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  6002947 acttaattgcacttttcatccctatcttttcgcaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 6002870  T

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Target: chr1; HSP #55
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 47955660 - 47955608
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  ||||| |||||||| ||||||||||||    
T  47955660 cttaattgcacttttcccccctatcttttattaattgtgcgattttgcacccc 47955608  T

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Target: chr1; HSP #56
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 8109045 - 8108991
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccat 301  Q
    ||||||||||||||| ||||||||  |||  ||||||||| ||||||||||||||    
T  8109045 cttaattgcacttttcccccctatcttttgccaattgtgcgattttgcaccccat 8108991  T

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Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 47955308 - 47955360
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  |||  ||||||||| ||||||||||||    
T  47955308 cttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 47955360  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 20419376 - 20419293
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  20419376 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 20419293  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 22740158 - 22740241
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  22740158 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 22740241  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 18863970 - 18864052
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  18863970 ttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 18864052  T

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Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 37888830 - 37888918
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37888830 tttggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 37888918  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 3205145 - 3205062
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||||    
T  3205145 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcaccccgtagttttaaacgagcgattttgccccctat 3205062  T

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Target: chr7; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 9035345 - 9035262
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  9035345 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 9035262  T

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Target: chr7; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 10533036 - 10533119
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  10533036 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 10533119  T

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Target: chr7; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 13741559 - 13741642
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  13741559 cttaattgcatttttcccccctatagtttaccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 13741642  T

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Target: chr7; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 13744284 - 13744202
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  13744284 cttaattgcactttt-ccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 13744202  T

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Target: chr7; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 17156969 - 17157052
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  17156969 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaatgagcgattttgccccctat 17157052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 37889311 - 37889228
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37889311 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 37889228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 37972448 - 37972365
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37972448 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 37972365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 20418891 - 20418973
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  20418891 ttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 20418973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 48359707 - 48359627
Alignment:
Q  249 taattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  48359707 taattgcactttttcccc-tatagtttaccaattgtgcgattttgcaccacatagtttaaaacgagcgattttgccccctat 48359627  T

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Target: chr7; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 29292924 - 29293007
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  29292924 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcatcccattgtttaaaacgagcgattttgccccctat 29293007  T

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Target: chr7; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 48359322 - 48359404
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  48359322 cttaattgcactttt-ccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttaccccctat 48359404  T

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Target: chr7; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 22740641 - 22740560
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  22740641 ttaattgcactttt-ccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgctccctat 22740560  T

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Target: chr7; HSP #18
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 29293403 - 29293315
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| |||||||||| |||| |||||||||||||  ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  29293403 tttggcttaattgcatttttcccccctatagtttgccaattgtgcgattttgcactccattgtttaaaacgagcgattttgccccctat 29293315  T

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Target: chr7; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 37971962 - 37972045
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||  ||||| ||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37971962 cttaattgcacttttctcccctgtagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 37972045  T

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Target: chr7; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 3204662 - 3204752
Alignment:
Q  238 aaagtttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||| ||||||||||||||  |||||||||||||  ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  3204662 aaagattggcttaattgcacttt--ccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcaattttgccccctat 3204752  T

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Target: chr7; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 38826965 - 38826882
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| |||| ||||||||||||| |||||||||| |||||||||| |||||||| |||||| || |||||||||||||    
T  38826965 cttaattgcatttttcccccctatagtttgtcaattgtgcgattttgcacctcatagttttaaacgaacggttttgccccctat 38826882  T

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Target: chr7; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 9034869 - 9034953
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc-atagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||| |||  ||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  9034869 cttaattgcacttttcccccctataatttgccaattgtgcgattctgcacccccatagttttaaacgagcgattttgccccctat 9034953  T

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Target: chr7; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 18864442 - 18864371
Alignment:
Q  259 ttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||  ||||||||| |||||||||| |||||||| ||| |||||||||||||||||||    
T  18864442 ttttccccctatagtttgccaattgtgcgattttgcacctcatagttttaaaagagcgattttgccccctat 18864371  T

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Target: chr7; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 42419079 - 42418997
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc-atagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| |||||||||||||  |||||||||  ||||||||||| ||||||| |||||||||||||||||||||||    
T  42419079 ttaattgcactttt-ccccctatagtttgccaattgtgcgtttttgcacccccatagttttaaacgagcgattttgccccctat 42418997  T

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Target: chr7; HSP #25
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 248 - 326
Target Start/End: Original strand, 36527387 - 36527464
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcccc 326  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| |||||| | ||||| ||||    
T  36527387 ttaattgcactttttcccc-tatagtttgtcaattgtgcgattttgcaccccatagttttaaacgatcaatttttcccc 36527464  T

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Target: chr7; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 36527850 - 36527767
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| |||| || | ||||||||  ||||| ||| |||||||| |||||||||| |||||||||||||||||||||||    
T  36527850 cttaattgcatttttccctcatatagtttgccaattatgcgattttgcatcccatagttttaaacgagcgattttgccccctat 36527767  T

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Target: chr7; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 42418593 - 42418676
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||| ||||||| |||||||||||||   |||||||| |||||| | || ||||||| |||||||||||||||||||||||    
T  42418593 cttaatttcacttttcccccctatagtttgctaattgtgcgattttgtatcctatagttttaaacgagcgattttgccccctat 42418676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 46816363 - 46816288
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttg 322  Q
    ||||||||||||||||||| ||||  |||| ||||| ||| ||||||||||||||| ||| |||||||||||||||    
T  46816363 cttaattgcactttttcccgctatcttttaccaattatgcgattttgcaccccatatttttaaacgagcgattttg 46816288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 16199029 - 16198970
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagttt 306  Q
    |||||||||||||||||||  ||||||||  ||||||||| |||||||||||||||||||    
T  16199029 cttaattgcactttttcccattatagtttgccaattgtgcgattttgcaccccatagttt 16198970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 323
Target Start/End: Original strand, 44599486 - 44599567
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||| |||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  44599486 tttggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 44599567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 44600187 - 44600111
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  44600187 cttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 44600111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 8643818 - 8643742
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||||||||   ||||||  |||| ||||||||| ||||||||||||||  | | ||||||||||||||||    
T  8643818 cttaattgcacttttcatccctatcttttaccaattgtgcgattttgcaccccatgttattaaacgagcgattttgc 8643742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 13863315 - 13863391
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||| ||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  13863315 cttaattgcatttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 13863391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 13864008 - 13863933
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||||||||  |||||||  |||  ||||||||| |||| |||||||||| ||| ||||||||||||||||    
T  13864008 cttaattgcacttttcacccctatcttttgccaattgtgcgattt-gcaccccatatttttaaacgagcgattttgc 13863933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 5735603 - 5735553
Alignment:
Q  243 ttgacttaattgcactttttccccctatagtttatcaattgtgcaattttg 293  Q
    |||| |||||||||||||||||||||||  ||||| |||||||| ||||||    
T  5735603 ttgatttaattgcactttttccccctatcttttattaattgtgcgattttg 5735553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 3687708 - 3687656
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  |||  ||||||||| ||||||||||||    
T  3687708 cttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 3687656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 8953940 - 8953889
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  ||| | |||||||||||||||||||||    
T  8953940 cttaattgcactttt-ccccctatcttttgttaattgtgcaattttgcacccc 8953889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 9412377 - 9412325
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  |||  ||||||||| ||||||||||||    
T  9412377 cttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 9412325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 293269 - 293190
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcccc 326  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  293269 cttaattgcactttttccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgcccc 293190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 4239418 - 4239335
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  4239418 cttaattgcactttttccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 4239335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 39744517 - 39744434
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  39744517 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 39744434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 43292039 - 43292122
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  43292039 cttaattgcacttttttcccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 43292122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 169496 - 169408
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| |||||||||| |||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  169496 tttggcttaattgcatttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 169408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 32703707 - 32703619
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  32703707 tttggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 32703619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 9023732 - 9023649
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  9023732 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaatgagcgattttgccccctat 9023649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 25161880 - 25161963
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  25161880 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 25161963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 28196825 - 28196742
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  28196825 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 28196742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 39744032 - 39744115
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| ||| |||||||||||||||||||||||    
T  39744032 cttaattgcactttttccccctatagtttaccaattgtgcgattttccaccccataattttaaacgagcgattttgccccctat 39744115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 9380309 - 9380392
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||    
T  9380309 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgccccccatagttttaaacgagcgattttgccccctat 9380392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 9380793 - 9380710
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  9380793 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcactccatagttttaaacgagcgattttgccccctat 9380710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 26207798 - 26207715
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| |||| |||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  26207798 cttaattgcatttttcccccctatagtttgccaattgtgcgattttgcaccccattgtttaaaacgagcgattttgccccctat 26207715  T

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Target: chr4; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 28196348 - 28196431
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||| |||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  28196348 cttaattgcacttttcccccctataatttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 28196431  T

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Target: chr4; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 48405964 - 48406046
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  48405964 cttaattgcactttt-ccccctatagtttgccaattatgcaattttgcaccccatagttttaaacgagcgattttgccccctat 48406046  T

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Target: chr4; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 292784 - 292866
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcccccta 329  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||| | |||||||| ||||||||||||||||||||||    
T  292784 cttaattgcacttttcccccctatagtttgccaattgtgcaattttgcatctcatagttttaaacgagcgattttgcccccta 292866  T

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Target: chr4; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 169015 - 169099
Alignment:
Q  247 cttaattgcactttt-tccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||||  ||||||||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  169015 cttaattgcacttttctccccctatagtttgccaattgtgcgattttgcaccccataattttaaacgagcgattttgccccctat 169099  T

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Target: chr4; HSP #18
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 23539843 - 23539924
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||  |||||||||||||  ||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  23539843 cttaattgcacttt--ccccctatagtttgccaattgtgcgattttgcaccccatagtttaaaacgaacgattttgccccctat 23539924  T

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Target: chr4; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 9023246 - 9023329
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||  ||||||||||||  ||||||||| ||||||||||||||||||| ||||||| |||||||||||||||    
T  9023246 cttaattgcacttttctcccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagtgattttgccccctat 9023329  T

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Target: chr4; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 23540304 - 23540221
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||  |||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||    
T  23540304 cttaattgcacttttcacccctatagtttgtcaattgtgcgattttgcaccctatagttttaaacgagcgattttaccccctat 23540221  T

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Target: chr4; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 26207363 - 26207445
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||  |||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  26207363 cttaattgcactttc-ccccctatagtttgccaattgtgcgattttgcaccccattgtttaaaacgagcgattttgccccctat 26207445  T

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Target: chr4; HSP #22
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 32703227 - 32703310
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||| |||  ||||||||| ||| |||||||| |||||| |||||||||||||||||||||||    
T  32703227 cttaattgcacttttcccccctataatttgccaattgtgcgattatgcaccccgtagttttaaacgagcgattttgccccctat 32703310  T

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Target: chr4; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 43292409 - 43292326
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| |||| |||||| ||||||  ||||||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  43292409 cttaattgcatttttcccccctttagtttgccaattgtgcgattttgcatcccatagttttaaacgagcgattttgccccctat 43292326  T

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Target: chr4; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 44468962 - 44468892
Alignment:
Q  260 tttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||||  ||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  44468962 tttccccctatagtttgccaattgtgcgattttgcacctcatagttttaaacgagcgattttgccccctat 44468892  T

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Target: chr4; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 39086675 - 39086592
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||  ||| ||||||||  ||||||||| ||||||||||  ||||||| |||||||||||||||||||||||    
T  39086675 cttaattgcacttttctcccatatagtttgccaattgtgcgattttgcacctaatagttttaaacgagcgattttgccccctat 39086592  T

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Target: chr4; HSP #26
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 260 - 330
Target Start/End: Complemental strand, 25162352 - 25162282
Alignment:
Q  260 tttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||| ||| |||||||||  ||||||||| ||||||||| |||||||||||||||||||||||    
T  25162352 tttccccctatattttgtcaattgtgtgattttgcactccatagttttaaacgagcgattttgccccctat 25162282  T

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Target: chr4; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 39912543 - 39912456
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||| ||||||| ||  |||||||||||||||||||| |||||||| |||||||||| ||||||| ||||||||| |||||    
T  39912543 tttggcttaattacactttt-ccttctatagtttatcaattgtgcgattttgcatcccatagttttaaacgagtgattttgccacctat 39912456  T

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Target: chr4; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 48406421 - 48406354
Alignment:
Q  263 ccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||| |||  ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  48406421 ccccctataatttgccaattgtgcgattttgcaccctatagttttaaacgagcgattttgccccctat 48406354  T

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Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 330
Target Start/End: Original strand, 12757788 - 12757851
Alignment:
Q  267 ctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||| |||||||    
T  12757788 ctatagtttgtcaattgtgcgattttgcatctcatagttttaaacgagcgattttgtcccctat 12757851  T

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Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 39912056 - 39912134
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcccc 326  Q
    ||||||||||||||| | ||||||||||||| |||||||| ||||| ||  ||||||||| |||||| ||||||||||||    
T  39912056 cttaattgcacttttcctccctatagtttattaattgtgcgattttaca-tccatagttttaaacgaacgattttgcccc 39912134  T

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Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 50678781 - 50678857
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  50678781 cttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 50678857  T

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Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 36095819 - 36095902
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| ||||  |||||||  |||  ||||||||| ||||||||||||||  ||| |||||||||||||||| ||||||    
T  36095819 cttaattgcatttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgcaccctat 36095902  T

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Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 36096526 - 36096451
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    ||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  36096526 ttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 36096451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 50679476 - 50679400
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||||||||  |||||||  |||  ||||||| | ||||||||||||||  ||| ||||||||||||||||    
T  50679476 cttaattgcacttttcacccctatcttttgccaattgtacgattttgcaccccatgtttttaaacgagcgattttgc 50679400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 56505695 - 56505771
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    ||||||||||||||| ||||||||  |||  ||||||||| ||||||||||||||| ||| ||  |||| |||||||    
T  56505695 cttaattgcacttttcccccctatcttttgccaattgtgcgattttgcaccccatatttttaattgagctattttgc 56505771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 43050610 - 43050685
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    ||||||||||||||   ||||||  |||| ||||||||| ||||||||||||||  ||| ||||||| ||||||||    
T  43050610 ttaattgcacttttcatccctatcttttaccaattgtgcgattttgcaccccatgtttttaaacgagtgattttgc 43050685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 12758254 - 12758173
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||  || ||||||||  ||||| ||   |||||||| ||||||||| |||||||| ||||||||||||||    
T  12758254 ttaattgcactttttttcc-tatagtttgccaattatgtgtttttgcacgccatagttttaaacgagcaattttgccccctat 12758173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 24775835 - 24775781
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccat 301  Q
    ||||||||||||||| || |||||  ||| |||||||||| ||||||||||||||    
T  24775835 cttaattgcacttttccctcctatcttttgtcaattgtgcgattttgcaccccat 24775781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 13198958 - 13198906
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  ||| | |||||||| ||||||||||||    
T  13198958 cttaattgcacttttcccccctatcttttgttaattgtgcgattttgcacccc 13198906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 43051304 - 43051228
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||| ||||  |||||||  |||  ||||||||  ||||||||||||||  ||| ||||||||||||||||    
T  43051304 cttaattgcatttttcacccctatcttttgccaattgtgtgattttgcaccccatgtttttaaacgagcgattttgc 43051228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 45830248 - 45830172
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||| ||||||||  |||||||  ||| |||||||||| ||||| ||||||||  ||| ||| ||||||||||||    
T  45830248 cttaatcgcacttttcacccctatcttttgtcaattgtgcgattttacaccccatgtttttaaaagagcgattttgc 45830172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 47666387 - 47666304
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47666387 cttaattgcacttttcccccctatagtttgccaattgtgcaattttgcaccccattgtttaaaacgagcgattttgccccctat 47666304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 53766166 - 53766248
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  53766166 ttaattgcactttttcctcctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 53766248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 42673352 - 42673265
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  42673352 tttggcttaattgcactttt-ccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 42673265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 48159899 - 48159982
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  48159899 cttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 48159982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 53687890 - 53687973
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  53687890 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttaccccctat 53687973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 10348856 - 10348768
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| |||||||||||||||||| | ||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  10348856 tttggcttaattgcactttttcctcatatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 10348768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 48160390 - 48160302
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||  |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  48160390 tttggcttaattgcactttccccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 48160302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 22429651 - 22429565
Alignment:
Q  243 ttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||||||  || |||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  22429651 ttgacttaattgcactttc-cctcctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 22429565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 44007959 - 44008052
Alignment:
Q  237 aaaagtttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||| ||||||||||||||| | ||||||||||| |||||||||||| |||||| |  ||||||| |||||||||||||||||||||||    
T  44007959 aaaagtttggcttaattgcacttttcctccctatagtttttcaattgtgcaaatttgcatcttatagttttaaacgagcgattttgccccctat 44008052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 53688359 - 53688272
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| |||||||||||||| ||||| ||||||||  ||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  53688359 tttggcttaattgcactttctcccc-tatagtttgccaattgtgcgattttgcactccatagtttaaaacgagcgattttgccccctat 53688272  T

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Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 26007184 - 26007266
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| |||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  26007184 cttaattgca-ttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccctctat 26007266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 40848523 - 40848605
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  40848523 cttaattgcactttt-ccccctatagtttgccaattgtgcgattttacaccccatagttttaaacgagcgattttgccccctat 40848605  T

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Target: chr3; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 40849013 - 40848930
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||| |||||||||  ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  40849013 cttaattgcacttttcccctctatagtttgccaattgtgcgattttgcaccccatagttttaaacaagcgattttgccccctat 40848930  T

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Target: chr3; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 42672980 - 42673062
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||| ||||||||||||||||    
T  42672980 cttaattgcactttt-ccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgatcgattttgccccctat 42673062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 320
Target Start/End: Original strand, 3353125 - 3353202
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattt 320  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||    
T  3353125 tttggcttaattgcactttt-ccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattt 3353202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 27238951 - 27238869
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| ||| |||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  27238951 ttaattgcacttttcccctctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgctccctat 27238869  T

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Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 24485516 - 24485429
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| | |||||||||||  ||||||||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  24485516 tttggcttaattgcactttt-ctccctatagtttgccaattgtgcgattttgcaccccatagttttaaatgagcgattttgccccctat 24485429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 3353591 - 3353520
Alignment:
Q  259 ttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||  ||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  3353591 ttttccccctatagtttgccaattgtgcgattttgcacctcatagttttaaacgagcgattttgccccctat 3353520  T

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Target: chr3; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 27238467 - 27238550
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||| |||||| || ||||||||||  ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  27238467 cttaattgtacttttccctcctatagtttgccaattgtgcgattttgcaccctatagttttaaacgagcgattttgccccctat 27238550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 47665913 - 47665996
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||||| |||||||| |||||||||| |||||||||| ||| |||||||||||| |||||| || |||||    
T  47665913 cttaattgcactttttccccttatagtttgtcaattgtgcgattttgcacctcattgtttaaaacgagtgattttaccacctat 47665996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 26007670 - 26007588
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||||||||||||||||  ||||||| | |||||||||  |||| ||| |||||||||||||||||||||||    
T  26007670 ttaattgcactttttccccctatagtttgccaattgtacgattttgcacttcataattttaaacgagcgattttgccccctat 26007588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 42456250 - 42456164
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||  ||||||| ||||   ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  42456250 tttggcttaattgcacttt--ccccctaaagttccccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 42456164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 24485034 - 24485106
Alignment:
Q  258 tttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||| ||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  24485034 tttttcctcctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgatttcgccccctat 24485106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 36180558 - 36180639
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||| |||  |||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||||| |||||||    
T  36180558 cttaattgcacattt--cccctatagtttgtcaattgtgcgattttgcatcccatagttttaaacgagcgattttgacccctat 36180639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 10348481 - 10348564
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||  ||| |||||||| |||||||| |||||||||| |||||| ||| ||||||||||||||| |||||||    
T  10348481 cttaattgcacttttctcccgtatagtttgtcaattgttcaattttgcatcccataattttaaacgagcgattttgtcccctat 10348564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 36181042 - 36180959
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| | ||||||||||| | |||||||| |||||| |||||||||||| ||||||||||||||  |||||||    
T  36181042 cttaattgcacttttcctccctatagtttgttaattgtgcgattttgtaccccatagttttaaacgagcgattttttcccctat 36180959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 44008457 - 44008370
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |  ||||||||||  |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||    
T  44008457 tttggcttaattgcactttt-catcctatagtttgccaattgtgcaattttgcacctcatagttttaaacgagcaatttttccccctat 44008370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 22429160 - 22429243
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||  |||||||| |||  ||||||||| | ||||||||| ||||||| ||||||||||||||| |||||||    
T  22429160 cttaattgcacttttctcccctatattttgccaattgtgcgactttgcacccaatagttttaaacgagcgattttgtcccctat 22429243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 21896562 - 21896487
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||| ||||||||| |||| ||| |||||||||| |||||||||||||| |||| | ||||||||||||||    
T  21896562 cttaattgcattttttcccc-tatattttgtcaattgtgcgattttgcaccccatggttttatacgagcgattttgc 21896487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 8314015 - 8314098
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||  |||||||| ||| |||||||||| ||||||||||| ||  ||| ||||| |||||||||| ||||||    
T  8314015 cttaattgcacttttctcccctatattttgtcaattgtgcgattttgcacccaatgtttttaaacgtgcgattttgcaccctat 8314098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 42455792 - 42455851
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagttt 306  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||| ||| |||||||    
T  42455792 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgccccctatagttt 42455851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 53766631 - 53766572
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagttt 306  Q
    ||||||||||||||| |||||||||||||   |||||||||||||||||||| |||||||    
T  53766631 cttaattgcacttttcccccctatagtttgcaaattgtgcaattttgcaccctatagttt 53766572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 20969079 - 20969019
Alignment:
Q  239 aagtttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||| ||||||||||||||| ||||||||  |||  ||||||||| ||||||||||||    
T  20969079 aagtttggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 20969019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 10293966 - 10293909
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    |||| ||||||||||||||| ||||||||  ||| | |||||||| ||||||||||||    
T  10293966 tttggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcacccc 10293909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 1928455 - 1928403
Alignment:
Q  278 caattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||| ||||||||||||||| ||| ||||||| | |||||| ||||||    
T  1928455 caattgtgcgattttgcaccccatatttttaaacgagtggttttgcaccctat 1928403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 10293610 - 10293662
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    |||||||||| ||||| |||||||  ||| |||||||||| ||||||||||||    
T  10293610 cttaattgcatttttttcccctatcttttgtcaattgtgcgattttgcacccc 10293662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 34498125 - 34498207
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  34498125 ttaattgcactttttccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgcaccctat 34498207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 37396710 - 37396793
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||  | ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  37396710 cttaattgcacttttcccccctatagtttgccgattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 37396793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 15444698 - 15444616
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||  |||||||    
T  15444698 ttaattgcactttttccccctataatttaccaattgtgcgattttgcaccccatagttttaaacgagcgattttatcccctat 15444616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 25439176 - 25439095
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  25439176 ttaattgcactttttcccc-tatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagcgattttgccctctat 25439095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 16169669 - 16169576
Alignment:
Q  237 aaaagtttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||| ||||||||||||||| | ||||||||||| |||||||||||| |||||| |  ||||||| |||||||||||||||||||||||    
T  16169669 aaaagtttggcttaattgcacttttcctccctatagtttttcaattgtgcaaatttgcatcttatagttttaaacgagcgattttgccccctat 16169576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 9623499 - 9623587
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||||| | |||||||||  ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  9623499 tttggcttaattgcactttttctcactatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcaattttgccccctat 9623587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 24473340 - 24473428
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| |||||||||||||||||||||||||||||  ||||||||  ||||||||||||||| ||| ||| |||||||||||||||||||    
T  24473340 tttggcttaattgcactttttccccctatagtttgccaattgtgtgattttgcaccccataattttaaatgagcgattttgccccctat 24473428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 37397202 - 37397114
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |||||||||||||  ||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||    
T  37397202 tttggcttaattgcacttttcccccctatagtttgccaattgtgcgattttgccccccatagttttaaacgagcgactttgccccctat 37397114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 17431289 - 17431372
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||| |||||||| |||||||||| ||||| |||| |||||||| |||||||||||||||||||||||    
T  17431289 cttaattgcacttttcccccatatagtttgtcaattgtgcgatttttcacctcatagttttaaacgagcgattttgccccctat 17431372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 20861690 - 20861607
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| |||||||||||||||| |  ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  20861690 cttaattgcattttttccccctatagtctgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgcctcctat 20861607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 41662523 - 41662606
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||| ||||||||  ||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  41662523 cttaattgcacttttcccccatatagtttgccaattgtgcgattttgcacctcatagttttaaacgagcgattttgccccctat 41662606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 25438785 - 25438853
Alignment:
Q  238 aaagtttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagttt 306  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||||    
T  25438785 aaagtttgacttaattgcacttttcccccctatagtttgccaattgtgcgattttgcaccccatagttt 25438853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 6199148 - 6199065
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||   |||||||||||  ||||||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  6199148 cttaattgcacttttcttccctatagtttgccaattgtgcgattttgcatcccatagttttaaacgagcgattttgccccctat 6199065  T

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Target: chr8; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 24473820 - 24473737
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||   |||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  24473820 cttaattgcacttttcatccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgtcccctat 24473737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 34498607 - 34498524
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||||||||||   |||||||| ||||||||||||||||||| |||| || |||| ||||||||||    
T  34498607 cttaattgcacttttcccccctatagtttgcaaattgtgcgattttgcaccccatagttttaaacaagagattatgccccctat 34498524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 323
Target Start/End: Original strand, 9822745 - 9822826
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||| |||||||||||||||  |||||||  |||||||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  9822745 tttggcttaattgcacttttcacccctatcttttatcaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 9822826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 13936725 - 13936800
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    ||||||||||||||| ||||||||  |||| ||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  13936725 cttaattgcactttt-ccccctatcttttaccaattgtgcgattttgcaccccatatttttaaacgagcgattttgc 13936800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 16169171 - 16169258
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |  ||||||||||  |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||    
T  16169171 tttggcttaattgcactttt-catcctatagtttgccaattgtgcaattttgcacctcatagttttaaacgagcaatttttccccctat 16169258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 6198660 - 6198743
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||  ||| ||| || |  ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  6198660 cttaattgcacttttctcccatatggtcttccaattgtgcgattttgcaccctatagttttaaacgagcgattttgccccctat 6198743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 33726692 - 33726743
Alignment:
Q  243 ttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgc 294  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  33726692 ttgacttaattgcactttttccccctatagtttaccaattgtgcgattttgc 33726743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 2856528 - 2856611
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||| | |||| | |||||||||||  ||||||||| |||||||||||||||||||||||||  |||||||  |||||||    
T  2856528 cttaattgtaattttcctccctatagtttgccaattgtgcgattttgcaccccatagtttaaaacgttcgattttatcccctat 2856611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 15444213 - 15444296
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| |||| ||| |||||||||  ||||||| ||||||| ||  ||||||||| |||||||||||||||| ||||||    
T  15444213 cttaattgcatttttcccctctatagtttgccaattgtacaattttacattccatagttttaaacgagcgattttgctccctat 15444296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 323
Target Start/End: Original strand, 22851387 - 22851468
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||| |||||||||||||||  |||||||  ||| |||||||||| ||||||||||||||  ||| |||| |||||||||||    
T  22851387 tttggcttaattgcacttttcacccctatcttttgtcaattgtgcgattttgcaccccatgtttttaaacaagcgattttgc 22851468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 39724105 - 39724024
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||| |||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  39724105 tttggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 39724024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 9823413 - 9823337
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  9823413 cttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 9823337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 13937441 - 13937365
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    ||||||||||||||| ||||||||  ||| |||||||||| | ||||||||||||  ||| ||||||| ||||||||    
T  13937441 cttaattgcacttttcccccctattttttgtcaattgtgcgaatttgcaccccatgtttttaaacgagtgattttgc 13937365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 13027332 - 13027257
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    ||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  13027332 ttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 13027257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 33727125 - 33727074
Alignment:
Q  279 aattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||| |||||||||  |||||||| |||||||||||||||||||||||    
T  33727125 aattgtgcgattttgcacttcatagttttaaacgagcgattttgccccctat 33727074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 323
Target Start/End: Original strand, 3307335 - 3307416
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||| |||||||||| ||||  |||||||  ||| |||||||||| |||||||| |||||| ||| |||| |||||||||||    
T  3307335 tttggcttaattgcatttttcacccctatcttttgtcaattgtgcgattttgcatcccatatttttaaacaagcgattttgc 3307416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 15442763 - 15442848
Alignment:
Q  245 gacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||| |||| ||||||||| ||   ||||||||  ||||||||||||||  ||| ||||| |||||||||| ||||||    
T  15442763 gacttaattgcatttttcccccctatatttcgccaattgtgtgattttgcaccccatgtttttaaacgtgcgattttgcaccctat 15442848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 765732 - 765788
Alignment:
Q  243 ttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||||||| ||||||||  |||  ||||||||| ||||||||||||    
T  765732 ttgacttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 765788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 13026637 - 13026713
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||||||||  |||||||  |||  ||||||||| |||||||||| |||  ||| ||||||||||||||||    
T  13026637 cttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacctcatgtttttaaacgagcgattttgc 13026713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 15156237 - 15156185
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  ||| |||||||||| ||||||||||||    
T  15156237 cttaattgcacttttcccccctatcttttgtcaattgtgcgattttgcacccc 15156185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 37752473 - 37752416
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    |||| ||||||||||||||| ||||||||  ||| | |||||||| ||||||||||||    
T  37752473 tttggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcacccc 37752416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 15155885 - 15155937
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  ||| | |||||||| ||||||||||||    
T  15155885 cttaattgcacttttcccccctatcttttgttaattgtgcgattttgcacccc 15155937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 41662455 - 41662403
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  |||  ||||||||| ||||||||||||    
T  41662455 cttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 41662403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 43245873 - 43245925
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||||||||||||  |||   |||||||| ||||||||||||    
T  43245873 cttaattgcactttttccccctatcttttgataattgtgcgattttgcacccc 43245925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 332 - 415
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  332 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcatcccatagttttaaacgagcgattttgccccctat 415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 326
Target Start/End: Complemental strand, 819 - 736
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcccc 326  Q
    |||| |||||||||||||||||||| ||||||||  ||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  819 tttggcttaattgcactttttcccc-tatagtttgccaattgtgcgattttgcaccccataattttaaacgagcgattttgcccc 736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 50077 - 50156
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccct 328  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50077 cttaattgcacttt--ccccctatagtttgtcaattgtgcaattttgcaccccatagttttaaacgagcgattttgccccct 50156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 50563 - 50475
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgca-ccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |||||||||||||  ||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||    
T  50563 tttggcttaattgcactttt-ccccctatagtttgccaattgtgcgattttgcacccccatagttttaaacgagcaattttgccccctat 50475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 38747 - 38664
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||| | |||||| ||||||||||||||||    
T  38747 cttaattgcactttttccccctatagtttgccaattgtgcgattttgcaccccatagtcttaaacgaacgattttgccccctat 38664  T

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Target: scaffold0041; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 38283 - 38336
Alignment:
Q  277 tcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| |||||||| |||||||||| ||| |||||||||||||||||||    
T  38283 tcaattgtgcgattttgcatcccatagttttaaatgagcgattttgccccctat 38336  T

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Target: scaffold0017 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 185326 - 185243
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| | |||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  185326 cttaattgcacttttcctccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 185243  T

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Target: scaffold0017; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 184841 - 184924
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||  || ||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  184841 cttaattgcacttttctcctctatagtttgtcaactgtgcaattttgcaccccatagttttaaacgagcgattttgccacctat 184924  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 7654600 - 7654517
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| ||||||| || ||||||||||||    
T  7654600 cttaattgcacttttcccccctatagtttgtcaattgtgcgattttgcaccccatagttttaaacgagtgactttgccccctat 7654517  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 10087910 - 10087827
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||||| ||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  10087910 cttaattgcacttttcccccctttagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 10087827  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 33974351 - 33974268
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| |||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  33974351 cttaattgcatttttcccccctatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 33974268  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 32734047 - 32733965
Alignment:
Q  248 ttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||| | |||||||||||  ||||||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  32734047 ttaattgcacttttcctccctatagtttgccaattgtgcgattttgcatcccatagttttaaacgagcgattttgccccctat 32733965  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 2354406 - 2354493
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| |||||||||| |||||||||||||||||| |||||||| | |||||||| ||||| ||||||||||||||||||| ||||||||    
T  2354406 tttggcttaattgca-tttttccccctatagtttttcaattgtacgattttgcatcccattgtttaaaacgagcgatttttccccctat 2354493  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 2354862 - 2354779
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||| |||| ||  ||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||    
T  2354862 cttaattgcatttttcccgtctatagtttgtcaattgtgcgattttgcaccccattgtttaaaacgagccattttgccccctat 2354779  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 22755141 - 22755058
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||  |||||||| |||||| ||| |||||||||| |||||||| |||||||||||||||||||||||    
T  22755141 cttaattgcacttttcccctttatagtttgtcaattatgcgattttgcaccacatagttttaaacgagcgattttgccccctat 22755058  T

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Target: chr6; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 29074408 - 29074341
Alignment:
Q  263 ccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  29074408 ccccctatagtttgccaattgtgcgattttgcaccccatagtttaaaacgagcgattttcccccctat 29074341  T

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Target: chr6; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 29079172 - 29079105
Alignment:
Q  263 ccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  29079172 ccccctatagtttgccaattgtgcgattttgcaccccatagtttaaaacgagcgattttcccccctat 29079105  T

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Target: chr6; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 29106981 - 29106914
Alignment:
Q  263 ccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  29106981 ccccctatagtttgccaattgtgcgattttgcaccccatagtttaaaacgagcgattttcccccctat 29106914  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 22684414 - 22684327
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |||| ||||||||  ||||||||  ||||||||||||||||||| |||| | ||||||||||||||||    
T  22684414 tttggcttaattgcactttt-ccccttatagtttgccaattgtgtgattttgcaccccatagttttaaacaaacgattttgccccctat 22684327  T

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Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 22754654 - 22754741
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||| ||||||||||||||| |||| ||||||||  ||||||||  ||||||||||||||||||| |||| | ||||||||||||||||    
T  22754654 tttggcttaattgcactttt-ccccttatagtttgccaattgtgtgattttgcaccccatagttttaaacaaacgattttgccccctat 22754741  T

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Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 13177096 - 13177029
Alignment:
Q  259 ttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgcccc 326  Q
    ||||||||||||||| | |||||||||  ||||| |||| |||||||| |||||||||||||||||||    
T  13177096 ttttccccctatagtatgtcaattgtgagattttacacctcatagttttaaacgagcgattttgcccc 13177029  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 323
Target Start/End: Original strand, 33828987 - 33829068
Alignment:
Q  242 tttgacttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||| |||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  33828987 tttggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 33829068  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 33829688 - 33829612
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||||||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  33829688 cttaattgcacttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 33829612  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 18241856 - 18241908
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||| ||||||||  ||| | |||||||| ||||||||||||    
T  18241856 cttaattgcacttttcccccctatcttttgttaattgtgcgattttgcacccc 18241908  T

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Target: scaffold0029 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 9907 - 9991
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgca-ccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||| || ||||||||||| |||||||||||||||||||||||    
T  9907 cttaattgcactttttccccctatagtttgccaattgtgcgatttttcacccccatagttttaaacgagcgattttgccccctat 9991  T

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Target: scaffold0176 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 19634 - 19705
Alignment:
Q  259 ttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    |||||||| ||||||||  ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  19634 ttttccccatatagtttgccaattgtgcgattttgcaccccatagttttaaacgagcgattttgccccctat 19705  T

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Target: scaffold0176; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 20095 - 20012
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgccccctat 330  Q
    ||||||||||||||| |||| |||||||| |||||||||| ||||||| ||||||||||| ||||   ||||||||||||||||    
T  20095 cttaattgcacttttcccccttatagtttgtcaattgtgcgattttgccccccatagttttaaactgacgattttgccccctat 20012  T

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Target: scaffold0802 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 1120 - 1172
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||||||||||||  ||| | |||||||| ||||||||||||    
T  1120 cttaattgcactttttccccctatcttttgttaattgtgcgattttgcacccc 1172  T

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Target: scaffold0802; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 1472 - 1420
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcacccc 299  Q
    ||||||||||||||||||||||||  |||  ||||||||| ||||||||||||    
T  1472 cttaattgcactttttccccctatcttttgccaattgtgcgattttgcacccc 1420  T

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Target: scaffold0328 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 6847 - 6771
Alignment:
Q  247 cttaattgcactttttccccctatagtttatcaattgtgcaattttgcaccccatagtttaaaacgagcgattttgc 323  Q
    |||||||||| ||||  |||||||  |||  ||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  6847 cttaattgcatttttcacccctatcttttgccaattgtgcgattttgcaccccatgtttttaaacgagcgattttgc 6771  T

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