View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_low_2 (Length: 527)
Name: NF14352_low_2
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 236 - 496
Target Start/End: Complemental strand, 30159025 - 30158765
Alignment:
| Q |
236 |
acacaccttaacagaacaagaagaagagcctcttccgtcagattcacctgataatctcggcgaccttcgtcgattctcctcggacaatttcatctcagaa |
335 |
Q |
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| T |
30159025 |
acacaccttaacagaacaagaagaagagcctcttccgtcagattcacctgataatctcggcgaccttcgtcgattctcctcggacaatttcatctcagaa |
30158926 |
T |
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| Q |
336 |
accctacctttcttccttccagattttccgttagaacgcacattgccgtcaattacatcggaaggagccgatttcaccactggagatcgctgggagtcgt |
435 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
30158925 |
accctacctttcttccttcctgattttccgttagaacgcacattgccgtcaattacatcgaaaggagccgatttcaccaccggagatcgctgggagtcgt |
30158826 |
T |
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| Q |
436 |
ctgcatgctctgactgaagtacctccggcggcgattcctccgtcattgcgacaacggcgga |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30158825 |
ctgcatgctctgactgaagtacctccggcggcgattcctccgtcattgcgacggcggcgga |
30158765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 30159150 - 30159107
Alignment:
| Q |
120 |
aaatctttcttaaactaaagaatcaatggagatcatacttatag |
163 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30159150 |
aaatgtttcttaaactaaagaatcaatggagatcatacttatag |
30159107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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