View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_low_20 (Length: 320)
Name: NF14352_low_20
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_low_20 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 1892831 - 1893150
Alignment:
| Q |
1 |
tcttgaaagagttcccagatgaagtaactttagtcttgttatacaccataactgccaccatcatctcaacatttgtagcattgttatcagttccaaatgc |
100 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
1892831 |
tcttgaaagagttccctgacgaagtaactttagtcttgttatacaccattactgccaccatcatatcaacagttgtagcattgttatcagttccaaatgc |
1892930 |
T |
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| Q |
101 |
aagtgcttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagatactattgctgcactttgaccaaaaacatgtactttgaccaa |
200 |
Q |
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| T |
1892931 |
aagtgcttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagatactattgctgcactttgaccaaaaacatgtactttgaccaa |
1893030 |
T |
|
| Q |
201 |
aaatagtgtagtttattgatgtcacatttctttttccagggtatatttgggaaatttatcagcagtacagctattgcatggtcattgaacatgaaggggg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1893031 |
aaatagtgtagtttattgatgtcacatttctttttccagggcatatttgggaaatttatcagcagtacagctattgcatggtcattgaacatgaaggggg |
1893130 |
T |
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| Q |
301 |
ctgtctatgtaacctcattc |
320 |
Q |
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|||||||||||||||||||| |
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| T |
1893131 |
ctgtctatgtaacctcattc |
1893150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 1880687 - 1880847
Alignment:
| Q |
1 |
tcttgaaagagttcccagatgaagtaactttagtcttgttatacaccataactgccaccatcatctcaacatttgtagcattgttatcagttccaaatgc |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
1880687 |
tcttgaaagagttctcagatgaagtaactttagtcttgttatacaccataactgctaccatcatatcaacagttgtagcattgttatcagttccaaatgc |
1880786 |
T |
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| Q |
101 |
aagtgcttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagatac |
161 |
Q |
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| T |
1880787 |
aagtgcttggaaaataggactaaatctctcactcatctctatagtttcttctgtaagatac |
1880847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 1887985 - 1888143
Alignment:
| Q |
3 |
ttgaaagagttcccagatgaagtaactttagtcttgttatacaccataactgccaccatcatctcaacatttgtagcattgttatcagttccaaatgcaa |
102 |
Q |
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||||||||||||||||||||| ||| ||||||||| | ||| |||| |||||||||||| | |||||| |||||||||||||||||||||||||||||| |
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| T |
1887985 |
ttgaaagagttcccagatgaaccaacattagtcttgctttactccattactgccaccatcttatcaacagttgtagcattgttatcagttccaaatgcaa |
1888084 |
T |
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| Q |
103 |
gtgcttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagatac |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1888085 |
gtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagatac |
1888143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 1913535 - 1913695
Alignment:
| Q |
1 |
tcttgaaagagttcccagatgaagtaactttagtcttgttatacaccataactgccaccatcatctcaacatttgtagcattgttatcagttccaaatgc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||| | |
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| T |
1913535 |
tcttgaaagagttcccagatgaactaactttagtcttgatatattccataactgccacaatcatatctacagttgtagctttgttatcagttccaaattc |
1913634 |
T |
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| Q |
101 |
aagtgcttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagatac |
161 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1913635 |
aagtgcttggataataggactaaatctctcacttatctccattgtttcttctgtaagatac |
1913695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 1898163 - 1898321
Alignment:
| Q |
4 |
tgaaagagttcccagatgaagtaactttagtcttgttatacaccataactgccaccatcatctcaacatttgtagcattgttatcagttccaaatgcaag |
103 |
Q |
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|||||||||||||||||||| ||||| || |||| | ||||||| ||||||||||||||| || | | ||||||| ||||||||||||||||||||||| |
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| T |
1898163 |
tgaaagagttcccagatgaactaactctaaccttgctttacaccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaatgcaag |
1898262 |
T |
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| Q |
104 |
tgcttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagatact |
162 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
1898263 |
tgcttggaaaataggactgaatctctcacttatctccattgtttcttctgtaagatact |
1898321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 1903460 - 1903619
Alignment:
| Q |
1 |
tcttgaaagagttcccagatgaagtaactttagtcttgttatacaccataactgccaccatcatctcaacatttgtagcattgttatcagttccaaatgc |
100 |
Q |
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|
||||||||||||||||||||||| ||||| || | ||||| ||| ||| ||||||||||||||| || | | ||||||| ||||||||||||||||| || |
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| T |
1903460 |
tcttgaaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaaagc |
1903559 |
T |
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| Q |
101 |
aagtgcttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagata |
160 |
Q |
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||||||||||||||||||| | |||||||||||| ||||| |||||| |||||||||||| |
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| T |
1903560 |
aagtgcttggaaaataggattgaatctctcactcgtctccgttgtttgttctgtaagata |
1903619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 1907693 - 1907852
Alignment:
| Q |
1 |
tcttgaaagagttcccagatgaagtaactttagtcttgttatacaccataactgccaccatcatctcaacatttgtagcattgttatcagttccaaatgc |
100 |
Q |
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||||||||||||||||||||||| ||||| || | ||||| ||| ||| ||||||||||||||| || | | ||||||| ||||||||||||||||| || |
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| T |
1907693 |
tcttgaaagagttcccagatgaactaactataatattgttttactccacaactgccaccatcatatctatagttgtagctttgttatcagttccaaaagc |
1907792 |
T |
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| Q |
101 |
aagtgcttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagata |
160 |
Q |
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||||||||||||||||||| | |||||||||||| ||||| |||||| |||||||||||| |
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| T |
1907793 |
aagtgcttggaaaataggattgaatctctcactcgtctccgttgtttgttctgtaagata |
1907852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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