View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14352_low_22 (Length: 305)

Name: NF14352_low_22
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14352_low_22
NF14352_low_22
[»] chr8 (1 HSPs)
chr8 (19-305)||(38873803-38874090)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 38874090 - 38873803
Alignment:
Q  19 tattacttaaaataaaataaatccaatcttatacnnnnnnngggattttcttttaccacccttcctcgaattttctttgagagagaggtccagaaggccc 118  Q
    ||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38874090 tattagttaaaataaaataaatccaatcttatactttttttgggattttcttttaccacccttcctcgaattttctttgagagagaggtctagaaggccc 38873991  T
Q  119 aaaactaaacaaggatcctatttttcttagaaattgctatatggaccgtttgcttgctcaaatacctcttgaaattctaaaagcgtcctttatacaacag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38873990 aaaactaaacaaggatcctatttttcttagaaattgctatatggaccgtctgcttgctcaaatacctcttgaaattctaaaagcgtcctttatacaacag 38873891  T
Q  219 tcaagatttttgattttatgagatcgaaagatgtctattgagcattatgtattagaatatatg-tttgatctgtttcaaaataatacc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38873890 tcaagatttttgattttatgagatcgaaagatgtctattgagcattatgtattagaatatatgttttgatctgtttcaaaataatacc 38873803  T

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