View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_low_23 (Length: 293)
Name: NF14352_low_23
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 37 - 275
Target Start/End: Original strand, 6479921 - 6480158
Alignment:
| Q |
37 |
atcggcagcctttatgaatgaattcaccttctatatatttgactagcctannnnnnnnatacatcacttagcttttaagaattcactaatattctttgaa |
136 |
Q |
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| T |
6479921 |
atcggcagcctttatgaatgaattcatcttctatatatttaactaccctattttttt-atacatcacttagctttcaagaattcaataatattctttgaa |
6480019 |
T |
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| Q |
137 |
aatccacgatgtccatcagcacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacacaatgat |
236 |
Q |
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||||||| |||||||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6480020 |
aatccacaatgtccatcaccacaatcgattacgctctccctaacaaaaaccacaacaagtacgatgtcttcttccactcagacatcattcacacaatgat |
6480119 |
T |
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| Q |
237 |
cacaaataaacctttcatggtggacaaatggctctcaag |
275 |
Q |
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| T |
6480120 |
cacaaataaacctttcatggtggacaaatggctctcaag |
6480158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 33 - 275
Target Start/End: Complemental strand, 6489636 - 6489397
Alignment:
| Q |
33 |
atgtatcggcagcctttatgaatgaattcaccttctatatatttgactagcctannnnnnnn-atacatcacttagcttttaagaattcactaatattct |
131 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||| |
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| T |
6489636 |
atgtatcggcagcctttatgaatgaattcaccttttatatatttgactagcctatttttttttatacatcactt-gctttcaagaattcaataatattct |
6489538 |
T |
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| Q |
132 |
ttgaaaatccacgatgtccatcagcacaatcgattatgttctccctaacaaaactcacaacaagtacgatgtcttcttccactcagacatcattcacaca |
231 |
Q |
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| T |
6489537 |
ttgaaaatccacgttgtccatcaccacaatcggttatgctctccctaacaaaactcacaa---gtacgatgtcttctttcactcagacatcattcacaca |
6489441 |
T |
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| Q |
232 |
atgatcacaaataaacctttcatggtggacaaatggctctcaag |
275 |
Q |
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| T |
6489440 |
atgatcacaaatagacctttcatggtggacaaatggctctcaag |
6489397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 95 - 275
Target Start/End: Original strand, 51946714 - 51946894
Alignment:
| Q |
95 |
atacatcacttagcttttaagaattcactaatattctttgaaaatccacgatgtccatcagcacaatcgattatgttctccctaacaaaactcacaacaa |
194 |
Q |
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||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| | | ||||||| |||||||||||||| |
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| T |
51946714 |
atacatcacttagctctcaagaattcaataatattcattgaaaatccacgatgtccatcaccacaatcgattacgctgtccctaataaaactcacaacaa |
51946813 |
T |
|
| Q |
195 |
gtacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacctttcatggtggacaaatggctctcaag |
275 |
Q |
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| T |
51946814 |
gcacgatgtcttcttccactcagacatcattcacacaatgatcacaaataaacctttcatggtggacaaatggctctcaag |
51946894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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