View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_low_27 (Length: 268)
Name: NF14352_low_27
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_low_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 3036893 - 3036639
Alignment:
| Q |
14 |
attatactgactgaattatttatatctaacatcctcatttaattttttaggaagagtagcattttaccatgttatgaagaataataatatttagtaaaag |
113 |
Q |
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| T |
3036893 |
attataccgactgaattatttaaatctaacatccccatttaatattttaggaagagtagcattttaccatgttatgaagaataataatatttagtaaaag |
3036794 |
T |
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| Q |
114 |
gtttcaataccctaatcaataatcagtttcaaagctaaaacaaacttacttttaaaaaatacaacatagaagcatatcagaacattctgcatgtaatttt |
213 |
Q |
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| T |
3036793 |
gtttcaataccctgatcaataatcagtttcaaagctaaaacaaacttacttttaaaaaatacaacatagaagcatatcagaacattctgcatgtaatttt |
3036694 |
T |
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| Q |
214 |
gattagaattcttaaatcaagacaataatatcatttttcattcgtctcaatccat |
268 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |
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| T |
3036693 |
gattagaattcttaaatcaagacgataagatcatttttcatttgtctcaatccat |
3036639 |
T |
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